Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06415

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS06405 and SGL_RS06410 are separated by 61 nucleotidesSGL_RS06410 and SGL_RS06415 are separated by 275 nucleotidesSGL_RS06415 and SGL_RS06420 are separated by 200 nucleotides SGL_RS06405: SGL_RS06405 - threonine-phosphate decarboxylase CobD, at 969,762 to 970,820 _RS06405 SGL_RS06410: SGL_RS06410 - HU family DNA-binding protein, at 970,882 to 971,184 _RS06410 SGL_RS06415: SGL_RS06415 - GNAT family N-acetyltransferase, at 971,460 to 972,284 _RS06415 SGL_RS06420: SGL_RS06420 - hypothetical protein, at 972,485 to 973,954 _RS06420 Position (kb) 971 972 973Strain fitness (log2 ratio) -1 0 1at 971.475 kb on + strandat 971.732 kb on + strand, within SGL_RS06415at 971.734 kb on + strand, within SGL_RS06415at 972.020 kb on + strand, within SGL_RS06415at 972.028 kb on - strand, within SGL_RS06415at 972.028 kb on - strand, within SGL_RS06415at 972.170 kb on - strand, within SGL_RS06415at 972.229 kb on + strandat 972.286 kb on + strandat 972.325 kb on - strandat 972.461 kb on + strandat 972.517 kb on - strandat 972.590 kb on - strandat 972.623 kb on + strandat 972.631 kb on - strandat 972.631 kb on - strandat 972.668 kb on + strand, within SGL_RS06420at 972.695 kb on + strand, within SGL_RS06420at 972.804 kb on + strand, within SGL_RS06420at 972.945 kb on - strand, within SGL_RS06420at 973.238 kb on - strand, within SGL_RS06420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
971,475 + -0.1
971,732 + SGL_RS06415 0.33 +0.4
971,734 + SGL_RS06415 0.33 +0.2
972,020 + SGL_RS06415 0.68 +0.3
972,028 - SGL_RS06415 0.69 +0.2
972,028 - SGL_RS06415 0.69 +0.3
972,170 - SGL_RS06415 0.86 +0.3
972,229 + +0.2
972,286 + -0.4
972,325 - +0.3
972,461 + -0.1
972,517 - +0.1
972,590 - -0.8
972,623 + -0.2
972,631 - -0.8
972,631 - +0.7
972,668 + SGL_RS06420 0.12 -0.3
972,695 + SGL_RS06420 0.14 +0.1
972,804 + SGL_RS06420 0.22 -0.4
972,945 - SGL_RS06420 0.31 +0.1
973,238 - SGL_RS06420 0.51 +0.1

Or see this region's nucleotide sequence