Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05870

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05865 and SGL_RS05870 are separated by 87 nucleotidesSGL_RS05870 and SGL_RS05875 are separated by 91 nucleotidesSGL_RS05875 and SGL_RS05880 are separated by 180 nucleotides SGL_RS05865: SGL_RS05865 - metallophosphoesterase, at 844,228 to 845,394 _RS05865 SGL_RS05870: SGL_RS05870 - DUF1823 family protein, at 845,482 to 845,874 _RS05870 SGL_RS05875: SGL_RS05875 - c-type cytochrome, at 845,966 to 846,328 _RS05875 SGL_RS05880: SGL_RS05880 - sugar ABC transporter substrate-binding protein, at 846,509 to 847,810 _RS05880 Position (kb) 845 846Strain fitness (log2 ratio) -2 -1 0 1at 844.532 kb on - strand, within SGL_RS05865at 844.595 kb on + strand, within SGL_RS05865at 844.784 kb on - strand, within SGL_RS05865at 844.842 kb on - strand, within SGL_RS05865at 844.852 kb on - strand, within SGL_RS05865at 844.909 kb on - strand, within SGL_RS05865at 844.950 kb on + strand, within SGL_RS05865at 844.995 kb on + strand, within SGL_RS05865at 845.003 kb on - strand, within SGL_RS05865at 845.046 kb on - strand, within SGL_RS05865at 845.212 kb on + strand, within SGL_RS05865at 845.212 kb on + strand, within SGL_RS05865at 845.335 kb on - strandat 845.374 kb on + strandat 845.571 kb on - strand, within SGL_RS05870at 845.669 kb on - strand, within SGL_RS05870at 845.758 kb on + strand, within SGL_RS05870at 845.914 kb on + strandat 846.154 kb on + strand, within SGL_RS05875at 846.369 kb on - strandat 846.391 kb on - strandat 846.779 kb on - strand, within SGL_RS05880at 846.815 kb on - strand, within SGL_RS05880

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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844,532 - SGL_RS05865 0.26 +0.3
844,595 + SGL_RS05865 0.31 +0.2
844,784 - SGL_RS05865 0.48 -0.0
844,842 - SGL_RS05865 0.53 +0.2
844,852 - SGL_RS05865 0.53 -0.4
844,909 - SGL_RS05865 0.58 +0.1
844,950 + SGL_RS05865 0.62 -0.1
844,995 + SGL_RS05865 0.66 -0.0
845,003 - SGL_RS05865 0.66 +1.2
845,046 - SGL_RS05865 0.70 +0.3
845,212 + SGL_RS05865 0.84 -0.0
845,212 + SGL_RS05865 0.84 +0.1
845,335 - +0.2
845,374 + -0.1
845,571 - SGL_RS05870 0.23 -0.4
845,669 - SGL_RS05870 0.48 -0.0
845,758 + SGL_RS05870 0.70 +1.1
845,914 + -0.1
846,154 + SGL_RS05875 0.52 +0.0
846,369 - -0.0
846,391 - +0.2
846,779 - SGL_RS05880 0.21 -2.2
846,815 - SGL_RS05880 0.24 -0.4

Or see this region's nucleotide sequence