Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05635

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS05630 and SGL_RS05635 are separated by 234 nucleotidesSGL_RS05635 and SGL_RS05640 are separated by 204 nucleotides SGL_RS05630: SGL_RS05630 - two-component system sensor histidine kinase Hik2, at 811,489 to 812,793 _RS05630 SGL_RS05635: SGL_RS05635 - DUF4269 domain-containing protein, at 813,028 to 813,594 _RS05635 SGL_RS05640: SGL_RS05640 - ABC transporter ATP-binding protein, at 813,799 to 815,604 _RS05640 Position (kb) 813 814Strain fitness (log2 ratio) -1 0 1at 813.089 kb on - strand, within SGL_RS05635at 813.471 kb on + strand, within SGL_RS05635at 813.485 kb on + strand, within SGL_RS05635at 813.582 kb on + strandat 813.590 kb on - strandat 813.631 kb on - strandat 813.810 kb on - strandat 813.904 kb on + strandat 813.951 kb on - strandat 813.990 kb on - strand, within SGL_RS05640at 814.012 kb on + strand, within SGL_RS05640at 814.025 kb on - strand, within SGL_RS05640at 814.203 kb on - strand, within SGL_RS05640at 814.475 kb on + strand, within SGL_RS05640at 814.497 kb on - strand, within SGL_RS05640at 814.515 kb on - strand, within SGL_RS05640at 814.515 kb on - strand, within SGL_RS05640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
813,089 - SGL_RS05635 0.11 +0.7
813,471 + SGL_RS05635 0.78 -0.2
813,485 + SGL_RS05635 0.81 +0.4
813,582 + -0.2
813,590 - +0.5
813,631 - -0.4
813,810 - -0.2
813,904 + +0.4
813,951 - -0.0
813,990 - SGL_RS05640 0.11 +0.1
814,012 + SGL_RS05640 0.12 -0.2
814,025 - SGL_RS05640 0.13 +0.3
814,203 - SGL_RS05640 0.22 +0.7
814,475 + SGL_RS05640 0.37 +0.0
814,497 - SGL_RS05640 0.39 -0.0
814,515 - SGL_RS05640 0.40 +0.2
814,515 - SGL_RS05640 0.40 +0.2

Or see this region's nucleotide sequence