Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05080 and SGL_RS05085 are separated by 146 nucleotides SGL_RS05085 and SGL_RS05090 are separated by 32 nucleotides SGL_RS05090 and SGL_RS05095 are separated by 106 nucleotides
SGL_RS05080: SGL_RS05080 - HAMP domain-containing methyl-accepting chemotaxis protein, at 687,391 to 690,252
_RS05080
SGL_RS05085: SGL_RS05085 - chemotaxis protein CheW, at 690,399 to 690,866
_RS05085
SGL_RS05090: SGL_RS05090 - response regulator, at 690,899 to 691,264
_RS05090
SGL_RS05095: SGL_RS05095 - response regulator, at 691,371 to 692,492
_RS05095
Position (kb) 690
691
692 Strain fitness (log2 ratio) -2
-1
0
1 at 689.914 kb on + strand, within SGL_RS05080 at 689.922 kb on - strand, within SGL_RS05080 at 689.959 kb on - strand, within SGL_RS05080 at 689.991 kb on - strand at 690.103 kb on + strand at 690.111 kb on - strand at 690.111 kb on - strand at 690.133 kb on + strand at 690.250 kb on - strand at 690.290 kb on - strand at 690.307 kb on - strand at 690.327 kb on - strand at 690.447 kb on - strand, within SGL_RS05085 at 690.447 kb on - strand, within SGL_RS05085 at 690.447 kb on - strand, within SGL_RS05085 at 690.555 kb on - strand, within SGL_RS05085 at 690.567 kb on + strand, within SGL_RS05085 at 690.646 kb on - strand, within SGL_RS05085 at 690.684 kb on + strand, within SGL_RS05085 at 690.732 kb on + strand, within SGL_RS05085 at 690.798 kb on + strand, within SGL_RS05085 at 690.823 kb on + strand at 690.870 kb on - strand at 690.948 kb on + strand, within SGL_RS05090 at 690.956 kb on - strand, within SGL_RS05090 at 690.956 kb on - strand, within SGL_RS05090 at 690.980 kb on - strand, within SGL_RS05090 at 690.982 kb on - strand, within SGL_RS05090 at 691.238 kb on - strand at 691.386 kb on + strand at 691.405 kb on - strand at 691.556 kb on + strand, within SGL_RS05095 at 691.564 kb on - strand, within SGL_RS05095 at 691.625 kb on - strand, within SGL_RS05095 at 691.625 kb on - strand, within SGL_RS05095 at 691.728 kb on + strand, within SGL_RS05095 at 691.751 kb on - strand, within SGL_RS05095 at 691.752 kb on - strand, within SGL_RS05095 at 691.762 kb on - strand, within SGL_RS05095 at 691.777 kb on - strand, within SGL_RS05095 at 691.826 kb on + strand, within SGL_RS05095 at 691.834 kb on - strand, within SGL_RS05095 at 691.834 kb on - strand, within SGL_RS05095 at 691.918 kb on + strand, within SGL_RS05095 at 691.921 kb on - strand, within SGL_RS05095 at 691.934 kb on - strand, within SGL_RS05095 at 692.093 kb on - strand, within SGL_RS05095 at 692.169 kb on - strand, within SGL_RS05095 at 692.260 kb on - strand, within SGL_RS05095 at 692.260 kb on - strand, within SGL_RS05095
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 689,914 + SGL_RS05080 0.88 -1.7 689,922 - SGL_RS05080 0.88 -1.8 689,959 - SGL_RS05080 0.90 -0.7 689,991 - -0.4 690,103 + +0.2 690,111 - +0.2 690,111 - +0.3 690,133 + +0.2 690,250 - -1.0 690,290 - -0.2 690,307 - -0.1 690,327 - -0.1 690,447 - SGL_RS05085 0.10 +0.2 690,447 - SGL_RS05085 0.10 -0.1 690,447 - SGL_RS05085 0.10 -1.1 690,555 - SGL_RS05085 0.33 +0.2 690,567 + SGL_RS05085 0.36 +0.1 690,646 - SGL_RS05085 0.53 -0.2 690,684 + SGL_RS05085 0.61 +0.5 690,732 + SGL_RS05085 0.71 -0.2 690,798 + SGL_RS05085 0.85 +0.0 690,823 + +0.1 690,870 - -0.3 690,948 + SGL_RS05090 0.13 +0.6 690,956 - SGL_RS05090 0.16 +0.4 690,956 - SGL_RS05090 0.16 +0.5 690,980 - SGL_RS05090 0.22 +0.4 690,982 - SGL_RS05090 0.23 -0.1 691,238 - -1.8 691,386 + -0.0 691,405 - +0.1 691,556 + SGL_RS05095 0.16 -0.3 691,564 - SGL_RS05095 0.17 +0.2 691,625 - SGL_RS05095 0.23 +0.6 691,625 - SGL_RS05095 0.23 -0.5 691,728 + SGL_RS05095 0.32 +0.4 691,751 - SGL_RS05095 0.34 -0.4 691,752 - SGL_RS05095 0.34 -0.2 691,762 - SGL_RS05095 0.35 +0.1 691,777 - SGL_RS05095 0.36 +0.2 691,826 + SGL_RS05095 0.41 -0.0 691,834 - SGL_RS05095 0.41 +0.6 691,834 - SGL_RS05095 0.41 -0.2 691,918 + SGL_RS05095 0.49 +0.6 691,921 - SGL_RS05095 0.49 +0.5 691,934 - SGL_RS05095 0.50 -0.0 692,093 - SGL_RS05095 0.64 -0.2 692,169 - SGL_RS05095 0.71 +0.7 692,260 - SGL_RS05095 0.79 +1.2 692,260 - SGL_RS05095 0.79 +0.2
Or see this region's nucleotide sequence