Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04635

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04630 and SGL_RS04635 are separated by 515 nucleotidesSGL_RS04635 and SGL_RS04640 are separated by 82 nucleotides SGL_RS04630: SGL_RS04630 - metal ABC transporter permease, at 585,497 to 586,342 _RS04630 SGL_RS04635: SGL_RS04635 - hypothetical protein, at 586,858 to 587,145 _RS04635 SGL_RS04640: SGL_RS04640 - cadherin domain-containing protein, at 587,228 to 593,125 _RS04640 Position (kb) 586 587 588Strain fitness (log2 ratio) -1 0 1at 585.935 kb on - strand, within SGL_RS04630at 586.040 kb on - strand, within SGL_RS04630at 586.099 kb on - strand, within SGL_RS04630at 586.181 kb on - strand, within SGL_RS04630at 586.247 kb on - strand, within SGL_RS04630at 586.263 kb on + strandat 586.451 kb on - strandat 586.602 kb on + strandat 586.605 kb on - strandat 586.643 kb on + strandat 586.649 kb on + strandat 586.655 kb on + strandat 586.982 kb on - strand, within SGL_RS04635at 587.060 kb on - strand, within SGL_RS04635at 587.093 kb on - strand, within SGL_RS04635at 587.251 kb on + strandat 587.272 kb on - strandat 587.431 kb on - strandat 587.511 kb on + strandat 587.570 kb on + strandat 587.612 kb on + strandat 587.658 kb on - strandat 587.780 kb on - strandat 587.861 kb on + strand, within SGL_RS04640at 587.962 kb on - strand, within SGL_RS04640at 588.009 kb on + strand, within SGL_RS04640at 588.044 kb on + strand, within SGL_RS04640at 588.068 kb on + strand, within SGL_RS04640at 588.123 kb on + strand, within SGL_RS04640

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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585,935 - SGL_RS04630 0.52 -0.6
586,040 - SGL_RS04630 0.64 +0.1
586,099 - SGL_RS04630 0.71 -0.0
586,181 - SGL_RS04630 0.81 -0.3
586,247 - SGL_RS04630 0.89 -1.1
586,263 + -0.1
586,451 - -0.3
586,602 + -0.6
586,605 - -0.2
586,643 + +0.3
586,649 + +0.3
586,655 + +0.3
586,982 - SGL_RS04635 0.43 +0.6
587,060 - SGL_RS04635 0.70 +0.4
587,093 - SGL_RS04635 0.82 -0.1
587,251 + +0.3
587,272 - -0.1
587,431 - +0.1
587,511 + -0.4
587,570 + -0.4
587,612 + -0.4
587,658 - -0.1
587,780 - +0.2
587,861 + SGL_RS04640 0.11 +0.0
587,962 - SGL_RS04640 0.12 +1.2
588,009 + SGL_RS04640 0.13 +0.4
588,044 + SGL_RS04640 0.14 -0.3
588,068 + SGL_RS04640 0.14 -0.5
588,123 + SGL_RS04640 0.15 +0.2

Or see this region's nucleotide sequence