Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04585

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04580 and SGL_RS04585 are separated by 90 nucleotidesSGL_RS04585 and SGL_RS04590 are separated by 33 nucleotidesSGL_RS04590 and SGL_RS04595 overlap by 4 nucleotides SGL_RS04580: SGL_RS04580 - DNA topoisomerase (ATP-hydrolyzing) subunit A, at 576,934 to 579,696 _RS04580 SGL_RS04585: SGL_RS04585 - response regulator, at 579,787 to 580,194 _RS04585 SGL_RS04590: SGL_RS04590 - zinc-dependent peptidase, at 580,228 to 581,055 _RS04590 SGL_RS04595: SGL_RS04595 - PPC domain-containing protein, at 581,052 to 581,474 _RS04595 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1at 578.904 kb on + strand, within SGL_RS04580at 579.178 kb on + strand, within SGL_RS04580at 579.526 kb on + strandat 579.891 kb on + strand, within SGL_RS04585at 579.918 kb on - strand, within SGL_RS04585at 579.962 kb on - strand, within SGL_RS04585at 579.979 kb on + strand, within SGL_RS04585at 580.057 kb on + strand, within SGL_RS04585at 580.106 kb on - strand, within SGL_RS04585at 580.118 kb on - strand, within SGL_RS04585at 580.197 kb on - strandat 580.507 kb on + strand, within SGL_RS04590at 580.507 kb on + strand, within SGL_RS04590at 580.585 kb on - strand, within SGL_RS04590at 580.665 kb on + strand, within SGL_RS04590at 581.038 kb on - strandat 581.071 kb on - strandat 581.116 kb on + strand, within SGL_RS04595at 581.156 kb on + strand, within SGL_RS04595

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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578,904 + SGL_RS04580 0.71 -2.0
579,178 + SGL_RS04580 0.81 -1.8
579,526 + -2.0
579,891 + SGL_RS04585 0.25 +0.5
579,918 - SGL_RS04585 0.32 -0.1
579,962 - SGL_RS04585 0.43 +0.0
579,979 + SGL_RS04585 0.47 +0.2
580,057 + SGL_RS04585 0.66 -0.1
580,106 - SGL_RS04585 0.78 +0.7
580,118 - SGL_RS04585 0.81 +0.6
580,197 - +0.9
580,507 + SGL_RS04590 0.34 +0.1
580,507 + SGL_RS04590 0.34 +0.4
580,585 - SGL_RS04590 0.43 +0.2
580,665 + SGL_RS04590 0.53 +0.1
581,038 - -0.3
581,071 - +0.2
581,116 + SGL_RS04595 0.15 -0.6
581,156 + SGL_RS04595 0.25 +0.2

Or see this region's nucleotide sequence