Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03735 and SGL_RS03740 are separated by 164 nucleotides SGL_RS03740 and SGL_RS03745 are separated by 63 nucleotides SGL_RS03745 and SGL_RS03750 are separated by 109 nucleotides
SGL_RS03735: SGL_RS03735 - Uma2 family endonuclease, at 385,467 to 386,012
_RS03735
SGL_RS03740: SGL_RS03740 - hypothetical protein, at 386,177 to 386,617
_RS03740
SGL_RS03745: SGL_RS03745 - glycosyltransferase family 4 protein, at 386,681 to 387,955
_RS03745
SGL_RS03750: SGL_RS03750 - esterase-like activity of phytase family protein, at 388,065 to 389,201
_RS03750
Position (kb) 386
387
388 Strain fitness (log2 ratio) -1
0
1 at 385.682 kb on + strand, within SGL_RS03735 at 385.795 kb on - strand, within SGL_RS03735 at 385.847 kb on - strand, within SGL_RS03735 at 386.175 kb on - strand at 386.219 kb on + strand at 386.292 kb on - strand, within SGL_RS03740 at 386.295 kb on + strand, within SGL_RS03740 at 386.435 kb on - strand, within SGL_RS03740 at 386.472 kb on + strand, within SGL_RS03740 at 386.480 kb on - strand, within SGL_RS03740 at 386.685 kb on + strand at 386.697 kb on - strand at 386.702 kb on - strand at 386.740 kb on + strand at 386.772 kb on - strand at 386.901 kb on + strand, within SGL_RS03745 at 387.025 kb on + strand, within SGL_RS03745 at 387.027 kb on + strand, within SGL_RS03745 at 387.027 kb on + strand, within SGL_RS03745 at 387.035 kb on - strand, within SGL_RS03745 at 387.063 kb on - strand, within SGL_RS03745 at 387.183 kb on + strand, within SGL_RS03745 at 387.191 kb on - strand, within SGL_RS03745 at 387.215 kb on - strand, within SGL_RS03745 at 387.226 kb on + strand, within SGL_RS03745 at 387.257 kb on - strand, within SGL_RS03745 at 387.260 kb on + strand, within SGL_RS03745 at 387.260 kb on + strand, within SGL_RS03745 at 387.268 kb on - strand, within SGL_RS03745 at 387.306 kb on - strand, within SGL_RS03745 at 387.377 kb on - strand, within SGL_RS03745 at 387.379 kb on + strand, within SGL_RS03745 at 387.466 kb on - strand, within SGL_RS03745 at 387.474 kb on - strand, within SGL_RS03745 at 387.485 kb on - strand, within SGL_RS03745 at 387.535 kb on - strand, within SGL_RS03745 at 387.606 kb on - strand, within SGL_RS03745 at 387.707 kb on + strand, within SGL_RS03745 at 387.730 kb on - strand, within SGL_RS03745 at 387.741 kb on + strand, within SGL_RS03745 at 388.113 kb on - strand at 388.120 kb on + strand at 388.120 kb on + strand at 388.195 kb on + strand, within SGL_RS03750 at 388.203 kb on - strand, within SGL_RS03750 at 388.251 kb on - strand, within SGL_RS03750 at 388.313 kb on + strand, within SGL_RS03750 at 388.313 kb on + strand, within SGL_RS03750 at 388.321 kb on - strand, within SGL_RS03750 at 388.321 kb on - strand, within SGL_RS03750 at 388.326 kb on - strand, within SGL_RS03750 at 388.333 kb on + strand, within SGL_RS03750 at 388.352 kb on - strand, within SGL_RS03750 at 388.394 kb on + strand, within SGL_RS03750 at 388.574 kb on - strand, within SGL_RS03750 at 388.601 kb on + strand, within SGL_RS03750 at 388.610 kb on - strand, within SGL_RS03750 at 388.704 kb on + strand, within SGL_RS03750 at 388.802 kb on - strand, within SGL_RS03750 at 388.811 kb on + strand, within SGL_RS03750 at 388.908 kb on - strand, within SGL_RS03750 at 388.912 kb on + strand, within SGL_RS03750
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 385,682 + SGL_RS03735 0.39 +0.2 385,795 - SGL_RS03735 0.60 +0.5 385,847 - SGL_RS03735 0.70 +0.8 386,175 - +0.1 386,219 + +0.5 386,292 - SGL_RS03740 0.26 +0.9 386,295 + SGL_RS03740 0.27 +0.9 386,435 - SGL_RS03740 0.59 +0.9 386,472 + SGL_RS03740 0.67 +0.7 386,480 - SGL_RS03740 0.69 +0.6 386,685 + +0.9 386,697 - +0.7 386,702 - +1.0 386,740 + +1.0 386,772 - +0.3 386,901 + SGL_RS03745 0.17 +1.2 387,025 + SGL_RS03745 0.27 +1.2 387,027 + SGL_RS03745 0.27 +0.8 387,027 + SGL_RS03745 0.27 +0.8 387,035 - SGL_RS03745 0.28 +1.2 387,063 - SGL_RS03745 0.30 +1.0 387,183 + SGL_RS03745 0.39 +0.6 387,191 - SGL_RS03745 0.40 +0.8 387,215 - SGL_RS03745 0.42 +1.6 387,226 + SGL_RS03745 0.43 +0.6 387,257 - SGL_RS03745 0.45 +0.9 387,260 + SGL_RS03745 0.45 +0.6 387,260 + SGL_RS03745 0.45 +1.0 387,268 - SGL_RS03745 0.46 +0.5 387,306 - SGL_RS03745 0.49 +0.4 387,377 - SGL_RS03745 0.55 +0.9 387,379 + SGL_RS03745 0.55 +1.5 387,466 - SGL_RS03745 0.62 +0.9 387,474 - SGL_RS03745 0.62 +1.1 387,485 - SGL_RS03745 0.63 +0.7 387,535 - SGL_RS03745 0.67 +1.0 387,606 - SGL_RS03745 0.73 +0.6 387,707 + SGL_RS03745 0.80 +0.4 387,730 - SGL_RS03745 0.82 +0.9 387,741 + SGL_RS03745 0.83 +0.7 388,113 - +0.5 388,120 + +0.0 388,120 + +0.7 388,195 + SGL_RS03750 0.11 -0.5 388,203 - SGL_RS03750 0.12 -0.1 388,251 - SGL_RS03750 0.16 -0.3 388,313 + SGL_RS03750 0.22 +0.4 388,313 + SGL_RS03750 0.22 +0.1 388,321 - SGL_RS03750 0.23 -0.4 388,321 - SGL_RS03750 0.23 -0.2 388,326 - SGL_RS03750 0.23 -0.1 388,333 + SGL_RS03750 0.24 -1.0 388,352 - SGL_RS03750 0.25 +0.0 388,394 + SGL_RS03750 0.29 +0.1 388,574 - SGL_RS03750 0.45 +0.4 388,601 + SGL_RS03750 0.47 +0.3 388,610 - SGL_RS03750 0.48 -0.3 388,704 + SGL_RS03750 0.56 +0.4 388,802 - SGL_RS03750 0.65 +0.2 388,811 + SGL_RS03750 0.66 +0.0 388,908 - SGL_RS03750 0.74 +0.3 388,912 + SGL_RS03750 0.74 -0.2
Or see this region's nucleotide sequence