Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03635

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03630 and SGL_RS03635 are separated by 65 nucleotidesSGL_RS03635 and SGL_RS03640 overlap by 4 nucleotides SGL_RS03630: SGL_RS03630 - glycosyltransferase family 2 protein, at 369,149 to 370,219 _RS03630 SGL_RS03635: SGL_RS03635 - glycosyltransferase family 4 protein, at 370,285 to 371,490 _RS03635 SGL_RS03640: SGL_RS03640 - UDP-glucose 4-epimerase GalE, at 371,487 to 372,509 _RS03640 Position (kb) 370 371 372Strain fitness (log2 ratio) -1 0 1at 369.745 kb on - strand, within SGL_RS03630at 369.786 kb on + strand, within SGL_RS03630at 369.837 kb on + strand, within SGL_RS03630at 369.907 kb on + strand, within SGL_RS03630at 370.116 kb on + strandat 370.627 kb on - strand, within SGL_RS03635at 370.984 kb on - strand, within SGL_RS03635at 371.381 kb on + strandat 371.389 kb on - strandat 371.389 kb on - strandat 371.393 kb on + strandat 371.503 kb on - strandat 371.571 kb on + strandat 371.582 kb on - strandat 371.642 kb on - strand, within SGL_RS03640at 372.012 kb on - strand, within SGL_RS03640at 372.196 kb on - strand, within SGL_RS03640at 372.366 kb on + strand, within SGL_RS03640at 372.366 kb on + strand, within SGL_RS03640at 372.376 kb on + strand, within SGL_RS03640

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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369,745 - SGL_RS03630 0.56 +0.3
369,786 + SGL_RS03630 0.59 +0.8
369,837 + SGL_RS03630 0.64 +0.3
369,907 + SGL_RS03630 0.71 -0.3
370,116 + +0.3
370,627 - SGL_RS03635 0.28 +0.5
370,984 - SGL_RS03635 0.58 +0.1
371,381 + -0.0
371,389 - +0.4
371,389 - +0.0
371,393 + +0.5
371,503 - +0.4
371,571 + -0.1
371,582 - +1.1
371,642 - SGL_RS03640 0.15 +0.1
372,012 - SGL_RS03640 0.51 +0.1
372,196 - SGL_RS03640 0.69 -0.1
372,366 + SGL_RS03640 0.86 -0.5
372,366 + SGL_RS03640 0.86 +0.5
372,376 + SGL_RS03640 0.87 +0.1

Or see this region's nucleotide sequence