Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03525

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS03520 and SGL_RS03525 are separated by 180 nucleotidesSGL_RS03525 and SGL_RS03530 are separated by 119 nucleotidesSGL_RS03530 and SGL_RS03535 are separated by 70 nucleotides SGL_RS03520: SGL_RS03520 - ABC transporter permease, at 349,468 to 350,298 _RS03520 SGL_RS03525: SGL_RS03525 - hypothetical protein, at 350,479 to 350,916 _RS03525 SGL_RS03530: SGL_RS03530 - DUF29 domain-containing protein, at 351,036 to 351,467 _RS03530 SGL_RS03535: SGL_RS03535 - Uma2 family endonuclease, at 351,538 to 352,101 _RS03535 Position (kb) 350 351Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 349.489 kb on - strandat 349.541 kb on - strandat 349.562 kb on - strand, within SGL_RS03520at 349.644 kb on - strand, within SGL_RS03520at 349.674 kb on + strand, within SGL_RS03520at 349.831 kb on - strand, within SGL_RS03520at 349.987 kb on + strand, within SGL_RS03520at 350.454 kb on - strandat 350.454 kb on - strandat 350.584 kb on + strand, within SGL_RS03525at 350.598 kb on - strand, within SGL_RS03525at 350.731 kb on + strand, within SGL_RS03525at 350.761 kb on + strand, within SGL_RS03525at 350.871 kb on - strand, within SGL_RS03525at 351.239 kb on - strand, within SGL_RS03530at 351.305 kb on - strand, within SGL_RS03530at 351.315 kb on - strand, within SGL_RS03530at 351.315 kb on - strand, within SGL_RS03530at 351.328 kb on - strand, within SGL_RS03530at 351.520 kb on + strandat 351.520 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
349,489 - -6.5
349,541 - -2.6
349,562 - SGL_RS03520 0.11 -1.0
349,644 - SGL_RS03520 0.21 -3.1
349,674 + SGL_RS03520 0.25 -3.2
349,831 - SGL_RS03520 0.44 -3.3
349,987 + SGL_RS03520 0.62 -3.9
350,454 - +0.1
350,454 - +0.9
350,584 + SGL_RS03525 0.24 +1.8
350,598 - SGL_RS03525 0.27 +0.4
350,731 + SGL_RS03525 0.58 +0.2
350,761 + SGL_RS03525 0.64 +1.2
350,871 - SGL_RS03525 0.89 +0.6
351,239 - SGL_RS03530 0.47 +0.1
351,305 - SGL_RS03530 0.62 -0.3
351,315 - SGL_RS03530 0.65 +0.1
351,315 - SGL_RS03530 0.65 +0.7
351,328 - SGL_RS03530 0.68 -1.0
351,520 + +0.2
351,520 + -0.2

Or see this region's nucleotide sequence