Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03040

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03035 and SGL_RS03040 are separated by 8 nucleotidesSGL_RS03040 and SGL_RS03045 are separated by 193 nucleotides SGL_RS03035: SGL_RS03035 - diguanylate cyclase, at 251,758 to 253,116 _RS03035 SGL_RS03040: SGL_RS03040 - MASE1 domain-containing protein, at 253,125 to 255,629 _RS03040 SGL_RS03045: SGL_RS03045 - GNAT family N-acetyltransferase, at 255,823 to 256,359 _RS03045 Position (kb) 253 254 255 256Strain fitness (log2 ratio) -1 0 1at 252.135 kb on - strand, within SGL_RS03035at 253.535 kb on - strand, within SGL_RS03040at 253.765 kb on - strand, within SGL_RS03040at 253.871 kb on + strand, within SGL_RS03040at 253.871 kb on + strand, within SGL_RS03040at 254.599 kb on + strand, within SGL_RS03040at 255.915 kb on + strand, within SGL_RS03045at 255.991 kb on + strand, within SGL_RS03045at 256.063 kb on + strand, within SGL_RS03045at 256.071 kb on - strand, within SGL_RS03045at 256.086 kb on - strand, within SGL_RS03045at 256.298 kb on - strand, within SGL_RS03045

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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252,135 - SGL_RS03035 0.28 +0.4
253,535 - SGL_RS03040 0.16 -0.2
253,765 - SGL_RS03040 0.26 +1.2
253,871 + SGL_RS03040 0.30 +0.5
253,871 + SGL_RS03040 0.30 +0.5
254,599 + SGL_RS03040 0.59 +0.1
255,915 + SGL_RS03045 0.17 -0.1
255,991 + SGL_RS03045 0.31 +0.1
256,063 + SGL_RS03045 0.45 -0.4
256,071 - SGL_RS03045 0.46 +0.2
256,086 - SGL_RS03045 0.49 -0.3
256,298 - SGL_RS03045 0.88 -0.2

Or see this region's nucleotide sequence