Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02935

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02930 and SGL_RS02935 are separated by 91 nucleotidesSGL_RS02935 and SGL_RS02940 are separated by 168 nucleotides SGL_RS02930: SGL_RS02930 - SulP family inorganic anion transporter, at 228,866 to 230,566 _RS02930 SGL_RS02935: SGL_RS02935 - proton extrusion protein PcxA, at 230,658 to 231,839 _RS02935 SGL_RS02940: SGL_RS02940 - magnesium chelatase ATPase subunit D, at 232,008 to 234,038 _RS02940 Position (kb) 230 231 232Strain fitness (log2 ratio) -1 0 1at 229.659 kb on - strand, within SGL_RS02930at 229.760 kb on + strand, within SGL_RS02930at 230.044 kb on - strand, within SGL_RS02930at 230.344 kb on - strand, within SGL_RS02930at 230.700 kb on - strandat 230.834 kb on - strand, within SGL_RS02935at 230.918 kb on - strand, within SGL_RS02935at 231.226 kb on + strand, within SGL_RS02935at 231.749 kb on - strandat 231.767 kb on + strandat 231.938 kb on + strandat 231.945 kb on - strandat 231.995 kb on - strandat 232.004 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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229,659 - SGL_RS02930 0.47 -0.1
229,760 + SGL_RS02930 0.53 +0.0
230,044 - SGL_RS02930 0.69 +0.9
230,344 - SGL_RS02930 0.87 +0.2
230,700 - -0.5
230,834 - SGL_RS02935 0.15 +0.1
230,918 - SGL_RS02935 0.22 +0.8
231,226 + SGL_RS02935 0.48 +0.2
231,749 - +0.6
231,767 + +0.1
231,938 + -1.0
231,945 - -0.5
231,995 - -0.7
232,004 + +0.9

Or see this region's nucleotide sequence