Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02105 and SGL_RS02110 are separated by 223 nucleotides SGL_RS02110 and SGL_RS02115 are separated by 98 nucleotides SGL_RS02115 and SGL_RS02120 are separated by 100 nucleotides
SGL_RS02105: SGL_RS02105 - glycogen synthase GlgA, at 57,340 to 58,815
_RS02105
SGL_RS02110: SGL_RS02110 - TetR/AcrR family transcriptional regulator, at 59,039 to 59,650
_RS02110
SGL_RS02115: SGL_RS02115 - GNAT family N-acetyltransferase, at 59,749 to 60,423
_RS02115
SGL_RS02120: SGL_RS02120 - ABC transporter ATP-binding protein, at 60,524 to 61,522
_RS02120
Position (kb) 59
60 Strain fitness (log2 ratio) -1
0
1 at 58.040 kb on + strand, within SGL_RS02105 at 58.198 kb on + strand, within SGL_RS02105 at 58.308 kb on - strand, within SGL_RS02105 at 58.343 kb on - strand, within SGL_RS02105 at 58.353 kb on - strand, within SGL_RS02105 at 58.416 kb on + strand, within SGL_RS02105 at 58.500 kb on - strand, within SGL_RS02105 at 58.618 kb on - strand, within SGL_RS02105 at 58.619 kb on - strand, within SGL_RS02105 at 58.626 kb on + strand, within SGL_RS02105 at 58.634 kb on - strand, within SGL_RS02105 at 58.634 kb on - strand, within SGL_RS02105 at 58.932 kb on - strand at 58.932 kb on - strand at 59.074 kb on + strand at 59.091 kb on + strand at 59.100 kb on - strand at 59.119 kb on + strand, within SGL_RS02110 at 59.226 kb on - strand, within SGL_RS02110 at 59.316 kb on + strand, within SGL_RS02110 at 59.360 kb on + strand, within SGL_RS02110 at 59.443 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.453 kb on - strand, within SGL_RS02110 at 59.457 kb on + strand, within SGL_RS02110 at 59.573 kb on + strand, within SGL_RS02110 at 59.594 kb on + strand at 59.605 kb on + strand at 59.815 kb on - strand at 59.822 kb on - strand, within SGL_RS02115 at 59.870 kb on + strand, within SGL_RS02115 at 59.970 kb on - strand, within SGL_RS02115 at 59.985 kb on - strand, within SGL_RS02115 at 60.022 kb on + strand, within SGL_RS02115 at 60.026 kb on - strand, within SGL_RS02115 at 60.237 kb on + strand, within SGL_RS02115 at 60.558 kb on - strand at 60.628 kb on - strand, within SGL_RS02120
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 58,040 + SGL_RS02105 0.47 -0.5 58,198 + SGL_RS02105 0.58 -0.0 58,308 - SGL_RS02105 0.66 +0.8 58,343 - SGL_RS02105 0.68 -0.2 58,353 - SGL_RS02105 0.69 +0.5 58,416 + SGL_RS02105 0.73 -0.3 58,500 - SGL_RS02105 0.79 +0.4 58,618 - SGL_RS02105 0.87 +0.1 58,619 - SGL_RS02105 0.87 -0.0 58,626 + SGL_RS02105 0.87 +0.2 58,634 - SGL_RS02105 0.88 -0.1 58,634 - SGL_RS02105 0.88 -0.1 58,932 - -0.1 58,932 - +0.3 59,074 + -0.0 59,091 + +0.4 59,100 - -0.2 59,119 + SGL_RS02110 0.13 +0.6 59,226 - SGL_RS02110 0.31 +0.0 59,316 + SGL_RS02110 0.45 -0.4 59,360 + SGL_RS02110 0.52 +0.3 59,443 - SGL_RS02110 0.66 -0.2 59,453 - SGL_RS02110 0.68 +0.1 59,453 - SGL_RS02110 0.68 +0.2 59,453 - SGL_RS02110 0.68 +0.5 59,453 - SGL_RS02110 0.68 +1.2 59,457 + SGL_RS02110 0.68 +0.5 59,573 + SGL_RS02110 0.87 +1.0 59,594 + +0.4 59,605 + -0.2 59,815 - +0.2 59,822 - SGL_RS02115 0.11 +0.1 59,870 + SGL_RS02115 0.18 +0.0 59,970 - SGL_RS02115 0.33 +0.1 59,985 - SGL_RS02115 0.35 -0.1 60,022 + SGL_RS02115 0.40 -0.1 60,026 - SGL_RS02115 0.41 -0.4 60,237 + SGL_RS02115 0.72 -0.0 60,558 - +0.0 60,628 - SGL_RS02120 0.10 -0.1
Or see this region's nucleotide sequence