Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02035 and SGL_RS02040 are separated by 4 nucleotides SGL_RS02040 and SGL_RS02045 are separated by 62 nucleotides
SGL_RS02035: SGL_RS02035 - iron-siderophore ABC transporter substrate-binding protein, at 43,511 to 44,506
_RS02035
SGL_RS02040: SGL_RS02040 - DUF1636 family protein, at 44,511 to 44,885
_RS02040
SGL_RS02045: SGL_RS02045 - ABC transporter ATP-binding protein, at 44,948 to 46,789
_RS02045
Position (kb) 44
45 Strain fitness (log2 ratio) -1
0
1 at 43.565 kb on + strand at 43.638 kb on + strand, within SGL_RS02035 at 43.663 kb on - strand, within SGL_RS02035 at 43.703 kb on - strand, within SGL_RS02035 at 43.728 kb on + strand, within SGL_RS02035 at 43.877 kb on - strand, within SGL_RS02035 at 43.995 kb on - strand, within SGL_RS02035 at 44.115 kb on + strand, within SGL_RS02035 at 44.123 kb on + strand, within SGL_RS02035 at 44.123 kb on + strand, within SGL_RS02035 at 44.123 kb on - strand, within SGL_RS02035 at 44.157 kb on + strand, within SGL_RS02035 at 44.170 kb on - strand, within SGL_RS02035 at 44.170 kb on - strand, within SGL_RS02035 at 44.203 kb on + strand, within SGL_RS02035 at 44.267 kb on + strand, within SGL_RS02035 at 44.329 kb on - strand, within SGL_RS02035 at 44.386 kb on + strand, within SGL_RS02035 at 44.386 kb on + strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035 at 44.394 kb on - strand, within SGL_RS02035 at 44.716 kb on + strand, within SGL_RS02040 at 44.724 kb on - strand, within SGL_RS02040 at 44.756 kb on - strand, within SGL_RS02040 at 44.825 kb on - strand, within SGL_RS02040 at 45.121 kb on + strand at 45.266 kb on - strand, within SGL_RS02045 at 45.312 kb on + strand, within SGL_RS02045 at 45.357 kb on + strand, within SGL_RS02045 at 45.425 kb on - strand, within SGL_RS02045 at 45.465 kb on + strand, within SGL_RS02045 at 45.482 kb on + strand, within SGL_RS02045 at 45.660 kb on + strand, within SGL_RS02045 at 45.763 kb on - strand, within SGL_RS02045
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 43,565 + +0.0 43,638 + SGL_RS02035 0.13 +0.4 43,663 - SGL_RS02035 0.15 +0.4 43,703 - SGL_RS02035 0.19 +0.9 43,728 + SGL_RS02035 0.22 +0.3 43,877 - SGL_RS02035 0.37 +0.2 43,995 - SGL_RS02035 0.49 +0.9 44,115 + SGL_RS02035 0.61 +0.4 44,123 + SGL_RS02035 0.61 -0.1 44,123 + SGL_RS02035 0.61 -0.1 44,123 - SGL_RS02035 0.61 +0.2 44,157 + SGL_RS02035 0.65 +0.2 44,170 - SGL_RS02035 0.66 -0.0 44,170 - SGL_RS02035 0.66 -0.7 44,203 + SGL_RS02035 0.69 +0.1 44,267 + SGL_RS02035 0.76 +0.6 44,329 - SGL_RS02035 0.82 +0.0 44,386 + SGL_RS02035 0.88 -0.1 44,386 + SGL_RS02035 0.88 +0.2 44,394 - SGL_RS02035 0.89 +0.2 44,394 - SGL_RS02035 0.89 -0.2 44,394 - SGL_RS02035 0.89 -0.2 44,716 + SGL_RS02040 0.55 +0.1 44,724 - SGL_RS02040 0.57 +0.3 44,756 - SGL_RS02040 0.65 +0.2 44,825 - SGL_RS02040 0.84 +0.7 45,121 + -0.1 45,266 - SGL_RS02045 0.17 -0.5 45,312 + SGL_RS02045 0.20 +0.4 45,357 + SGL_RS02045 0.22 +0.5 45,425 - SGL_RS02045 0.26 +0.2 45,465 + SGL_RS02045 0.28 -0.2 45,482 + SGL_RS02045 0.29 +0.3 45,660 + SGL_RS02045 0.39 +0.1 45,763 - SGL_RS02045 0.44 +0.4
Or see this region's nucleotide sequence