Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02010

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02005 and SGL_RS02010 are separated by 76 nucleotidesSGL_RS02010 and SGL_RS02015 are separated by 141 nucleotides SGL_RS02005: SGL_RS02005 - energy transducer TonB, at 33,891 to 35,489 _RS02005 SGL_RS02010: SGL_RS02010 - hypothetical protein, at 35,566 to 36,615 _RS02010 SGL_RS02015: SGL_RS02015 - ABC transporter ATP-binding protein, at 36,757 to 38,538 _RS02015 Position (kb) 35 36 37Strain fitness (log2 ratio) -1 0 1 2at 34.579 kb on - strand, within SGL_RS02005at 34.629 kb on - strand, within SGL_RS02005at 34.736 kb on - strand, within SGL_RS02005at 34.736 kb on - strand, within SGL_RS02005at 34.745 kb on + strand, within SGL_RS02005at 34.745 kb on + strand, within SGL_RS02005at 34.750 kb on + strand, within SGL_RS02005at 34.753 kb on - strand, within SGL_RS02005at 34.789 kb on - strand, within SGL_RS02005at 34.819 kb on + strand, within SGL_RS02005at 34.829 kb on + strand, within SGL_RS02005at 34.859 kb on + strand, within SGL_RS02005at 34.865 kb on + strand, within SGL_RS02005at 34.872 kb on + strand, within SGL_RS02005at 34.893 kb on + strand, within SGL_RS02005at 34.971 kb on + strand, within SGL_RS02005at 34.979 kb on - strand, within SGL_RS02005at 34.979 kb on - strand, within SGL_RS02005at 34.981 kb on + strand, within SGL_RS02005at 35.030 kb on + strand, within SGL_RS02005at 35.054 kb on + strand, within SGL_RS02005at 35.066 kb on + strand, within SGL_RS02005at 35.078 kb on + strand, within SGL_RS02005at 35.078 kb on + strand, within SGL_RS02005at 35.166 kb on + strand, within SGL_RS02005at 35.193 kb on + strand, within SGL_RS02005at 35.297 kb on - strand, within SGL_RS02005at 35.312 kb on + strand, within SGL_RS02005at 35.320 kb on - strand, within SGL_RS02005at 35.353 kb on + strandat 35.353 kb on + strandat 35.356 kb on - strandat 35.361 kb on - strandat 35.361 kb on - strandat 35.379 kb on + strandat 35.464 kb on + strandat 35.472 kb on - strandat 35.648 kb on + strandat 35.648 kb on + strandat 35.656 kb on - strandat 35.846 kb on + strand, within SGL_RS02010at 35.854 kb on - strand, within SGL_RS02010at 35.941 kb on + strand, within SGL_RS02010at 35.946 kb on + strand, within SGL_RS02010at 35.983 kb on + strand, within SGL_RS02010at 35.985 kb on + strand, within SGL_RS02010at 36.051 kb on - strand, within SGL_RS02010at 36.051 kb on - strand, within SGL_RS02010at 36.053 kb on + strand, within SGL_RS02010at 36.053 kb on + strand, within SGL_RS02010at 36.154 kb on - strand, within SGL_RS02010at 36.156 kb on + strand, within SGL_RS02010at 36.156 kb on + strand, within SGL_RS02010at 36.244 kb on - strand, within SGL_RS02010at 36.247 kb on + strand, within SGL_RS02010at 36.247 kb on + strand, within SGL_RS02010at 36.254 kb on - strand, within SGL_RS02010at 36.327 kb on - strand, within SGL_RS02010at 36.484 kb on - strand, within SGL_RS02010at 36.569 kb on + strandat 36.772 kb on - strandat 36.777 kb on + strandat 36.777 kb on + strandat 36.818 kb on + strandat 36.818 kb on + strandat 36.890 kb on + strandat 36.898 kb on - strandat 36.898 kb on - strandat 36.898 kb on - strandat 36.917 kb on + strandat 37.015 kb on + strand, within SGL_RS02015at 37.097 kb on - strand, within SGL_RS02015at 37.140 kb on + strand, within SGL_RS02015at 37.158 kb on - strand, within SGL_RS02015at 37.245 kb on + strand, within SGL_RS02015at 37.257 kb on - strand, within SGL_RS02015at 37.268 kb on - strand, within SGL_RS02015at 37.322 kb on + strand, within SGL_RS02015at 37.354 kb on - strand, within SGL_RS02015at 37.395 kb on + strand, within SGL_RS02015at 37.462 kb on - strand, within SGL_RS02015at 37.499 kb on - strand, within SGL_RS02015at 37.504 kb on + strand, within SGL_RS02015at 37.517 kb on - strand, within SGL_RS02015at 37.547 kb on - strand, within SGL_RS02015at 37.586 kb on - strand, within SGL_RS02015

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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34,579 - SGL_RS02005 0.43 +0.9
34,629 - SGL_RS02005 0.46 -0.2
34,736 - SGL_RS02005 0.53 -0.0
34,736 - SGL_RS02005 0.53 +0.4
34,745 + SGL_RS02005 0.53 +0.3
34,745 + SGL_RS02005 0.53 +0.2
34,750 + SGL_RS02005 0.54 +0.1
34,753 - SGL_RS02005 0.54 +0.5
34,789 - SGL_RS02005 0.56 +0.8
34,819 + SGL_RS02005 0.58 +0.5
34,829 + SGL_RS02005 0.59 +1.0
34,859 + SGL_RS02005 0.61 +0.8
34,865 + SGL_RS02005 0.61 +0.3
34,872 + SGL_RS02005 0.61 +0.7
34,893 + SGL_RS02005 0.63 +0.6
34,971 + SGL_RS02005 0.68 -0.1
34,979 - SGL_RS02005 0.68 +0.6
34,979 - SGL_RS02005 0.68 -0.1
34,981 + SGL_RS02005 0.68 +0.6
35,030 + SGL_RS02005 0.71 +0.0
35,054 + SGL_RS02005 0.73 -0.8
35,066 + SGL_RS02005 0.73 +0.0
35,078 + SGL_RS02005 0.74 +0.2
35,078 + SGL_RS02005 0.74 +0.1
35,166 + SGL_RS02005 0.80 +0.0
35,193 + SGL_RS02005 0.81 +0.4
35,297 - SGL_RS02005 0.88 +0.1
35,312 + SGL_RS02005 0.89 -0.1
35,320 - SGL_RS02005 0.89 +0.4
35,353 + -0.4
35,353 + +0.1
35,356 - +0.0
35,361 - -0.3
35,361 - -0.0
35,379 + -0.1
35,464 + -0.2
35,472 - +0.2
35,648 + +0.3
35,648 + -0.2
35,656 - +0.0
35,846 + SGL_RS02010 0.27 +0.2
35,854 - SGL_RS02010 0.27 +0.7
35,941 + SGL_RS02010 0.36 +0.2
35,946 + SGL_RS02010 0.36 +0.2
35,983 + SGL_RS02010 0.40 +0.4
35,985 + SGL_RS02010 0.40 +0.1
36,051 - SGL_RS02010 0.46 +0.1
36,051 - SGL_RS02010 0.46 +0.5
36,053 + SGL_RS02010 0.46 +1.8
36,053 + SGL_RS02010 0.46 -0.7
36,154 - SGL_RS02010 0.56 +0.2
36,156 + SGL_RS02010 0.56 +0.3
36,156 + SGL_RS02010 0.56 +0.8
36,244 - SGL_RS02010 0.65 +0.1
36,247 + SGL_RS02010 0.65 +0.7
36,247 + SGL_RS02010 0.65 +0.5
36,254 - SGL_RS02010 0.66 -0.5
36,327 - SGL_RS02010 0.72 +0.3
36,484 - SGL_RS02010 0.87 -0.0
36,569 + +0.0
36,772 - +0.1
36,777 + +0.3
36,777 + +0.5
36,818 + -0.1
36,818 + -0.1
36,890 + +0.0
36,898 - +0.4
36,898 - +0.3
36,898 - -0.3
36,917 + -0.0
37,015 + SGL_RS02015 0.14 +0.1
37,097 - SGL_RS02015 0.19 -0.0
37,140 + SGL_RS02015 0.21 +0.0
37,158 - SGL_RS02015 0.23 -0.2
37,245 + SGL_RS02015 0.27 -0.1
37,257 - SGL_RS02015 0.28 +0.8
37,268 - SGL_RS02015 0.29 -0.2
37,322 + SGL_RS02015 0.32 +0.3
37,354 - SGL_RS02015 0.34 +0.4
37,395 + SGL_RS02015 0.36 +0.1
37,462 - SGL_RS02015 0.40 +0.0
37,499 - SGL_RS02015 0.42 -0.5
37,504 + SGL_RS02015 0.42 +0.1
37,517 - SGL_RS02015 0.43 -0.1
37,547 - SGL_RS02015 0.44 +0.0
37,586 - SGL_RS02015 0.47 +0.0

Or see this region's nucleotide sequence