Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01925

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01920 and SGL_RS01925 are separated by 150 nucleotidesSGL_RS01925 and SGL_RS01930 are separated by 134 nucleotides SGL_RS01920: SGL_RS01920 - NAD-dependent DNA ligase LigA, at 10,622 to 12,631 _RS01920 SGL_RS01925: SGL_RS01925 - Uma2 family endonuclease, at 12,782 to 13,363 _RS01925 SGL_RS01930: SGL_RS01930 - iron ABC transporter permease, at 13,498 to 14,529 _RS01930 Position (kb) 12 13 14Strain fitness (log2 ratio) -1 0 1at 11.903 kb on + strand, within SGL_RS01920at 12.661 kb on - strandat 12.720 kb on + strandat 12.728 kb on - strandat 13.154 kb on - strand, within SGL_RS01925at 13.194 kb on + strand, within SGL_RS01925at 13.389 kb on + strandat 13.571 kb on + strandat 13.604 kb on + strand, within SGL_RS01930at 13.619 kb on - strand, within SGL_RS01930at 13.722 kb on - strand, within SGL_RS01930at 13.772 kb on + strand, within SGL_RS01930at 13.784 kb on + strand, within SGL_RS01930at 13.791 kb on - strand, within SGL_RS01930at 13.864 kb on - strand, within SGL_RS01930at 13.875 kb on + strand, within SGL_RS01930at 13.888 kb on - strand, within SGL_RS01930at 13.949 kb on + strand, within SGL_RS01930at 14.136 kb on + strand, within SGL_RS01930at 14.159 kb on + strand, within SGL_RS01930

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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11,903 + SGL_RS01920 0.64 -1.0
12,661 - +0.2
12,720 + -0.2
12,728 - -0.0
13,154 - SGL_RS01925 0.64 +0.9
13,194 + SGL_RS01925 0.71 +0.3
13,389 + +0.4
13,571 + +0.8
13,604 + SGL_RS01930 0.10 -0.5
13,619 - SGL_RS01930 0.12 +0.1
13,722 - SGL_RS01930 0.22 -0.1
13,772 + SGL_RS01930 0.27 +0.3
13,784 + SGL_RS01930 0.28 -0.2
13,791 - SGL_RS01930 0.28 -0.3
13,864 - SGL_RS01930 0.35 +0.2
13,875 + SGL_RS01930 0.37 -0.4
13,888 - SGL_RS01930 0.38 +0.4
13,949 + SGL_RS01930 0.44 +0.5
14,136 + SGL_RS01930 0.62 +0.0
14,159 + SGL_RS01930 0.64 +0.5

Or see this region's nucleotide sequence