Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01860

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01855 and SGL_RS01860 are separated by 321 nucleotidesSGL_RS01860 and SGL_RS01865 are separated by 238 nucleotides SGL_RS01855: SGL_RS01855 - AIPR family protein, at 100,603 to 101,829 _RS01855 SGL_RS01860: SGL_RS01860 - CAP domain-containing protein, at 102,151 to 102,672 _RS01860 SGL_RS01865: SGL_RS01865 - NERD domain-containing protein, at 102,911 to 103,720 _RS01865 Position (kb) 102 103Strain fitness (log2 ratio) -1 0 1at 101.184 kb on + strand, within SGL_RS01855at 101.702 kb on + strand, within SGL_RS01855at 101.883 kb on - strandat 101.914 kb on - strandat 101.933 kb on - strandat 102.234 kb on - strand, within SGL_RS01860at 102.234 kb on - strand, within SGL_RS01860at 102.281 kb on + strand, within SGL_RS01860at 102.287 kb on + strand, within SGL_RS01860at 102.287 kb on + strand, within SGL_RS01860at 102.287 kb on + strand, within SGL_RS01860at 102.287 kb on + strand, within SGL_RS01860at 102.353 kb on - strand, within SGL_RS01860at 102.364 kb on + strand, within SGL_RS01860at 102.429 kb on - strand, within SGL_RS01860at 102.454 kb on - strand, within SGL_RS01860at 102.465 kb on + strand, within SGL_RS01860at 102.473 kb on - strand, within SGL_RS01860at 102.630 kb on + strandat 102.645 kb on + strandat 102.645 kb on + strandat 102.645 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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101,184 + SGL_RS01855 0.47 -0.1
101,702 + SGL_RS01855 0.90 -0.4
101,883 - +0.2
101,914 - +0.1
101,933 - +1.0
102,234 - SGL_RS01860 0.16 +0.7
102,234 - SGL_RS01860 0.16 +1.4
102,281 + SGL_RS01860 0.25 +0.9
102,287 + SGL_RS01860 0.26 +1.1
102,287 + SGL_RS01860 0.26 +0.9
102,287 + SGL_RS01860 0.26 +0.4
102,287 + SGL_RS01860 0.26 -0.4
102,353 - SGL_RS01860 0.39 -0.1
102,364 + SGL_RS01860 0.41 +0.9
102,429 - SGL_RS01860 0.53 +0.4
102,454 - SGL_RS01860 0.58 +0.6
102,465 + SGL_RS01860 0.60 +1.0
102,473 - SGL_RS01860 0.62 +0.2
102,630 + +0.0
102,645 + +0.3
102,645 + +0.8
102,645 + -0.5

Or see this region's nucleotide sequence