Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01815

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19535 and SGL_RS01815 overlap by 8 nucleotidesSGL_RS01815 and SGL_RS01820 overlap by 14 nucleotides SGL_RS19535: SGL_RS19535 - hypothetical protein, at 89,982 to 91,103 _RS19535 SGL_RS01815: SGL_RS01815 - restriction endonuclease subunit S, at 91,096 to 92,280 _RS01815 SGL_RS01820: SGL_RS01820 - Fic family protein, at 92,267 to 93,343 _RS01820 Position (kb) 91 92 93Strain fitness (log2 ratio) -1 0 1at 90.138 kb on + strand, within SGL_RS19535at 90.236 kb on + strand, within SGL_RS19535at 90.264 kb on + strand, within SGL_RS19535at 90.265 kb on + strand, within SGL_RS19535at 90.365 kb on + strand, within SGL_RS19535at 90.371 kb on + strand, within SGL_RS19535at 90.373 kb on - strand, within SGL_RS19535at 90.469 kb on + strand, within SGL_RS19535at 90.487 kb on - strand, within SGL_RS19535at 90.502 kb on + strand, within SGL_RS19535at 90.557 kb on + strand, within SGL_RS19535at 90.563 kb on + strand, within SGL_RS19535at 90.637 kb on - strand, within SGL_RS19535at 90.640 kb on + strand, within SGL_RS19535at 90.786 kb on - strand, within SGL_RS19535at 90.828 kb on + strand, within SGL_RS19535at 90.828 kb on + strand, within SGL_RS19535at 90.829 kb on - strand, within SGL_RS19535at 90.855 kb on + strand, within SGL_RS19535at 90.863 kb on + strand, within SGL_RS19535at 90.878 kb on + strand, within SGL_RS19535at 90.885 kb on - strand, within SGL_RS19535at 90.891 kb on + strand, within SGL_RS19535at 91.561 kb on + strand, within SGL_RS01815at 91.582 kb on + strand, within SGL_RS01815at 91.582 kb on + strand, within SGL_RS01815at 91.590 kb on - strand, within SGL_RS01815at 91.590 kb on - strand, within SGL_RS01815at 91.626 kb on - strand, within SGL_RS01815at 91.633 kb on + strand, within SGL_RS01815at 91.653 kb on + strand, within SGL_RS01815at 91.679 kb on + strand, within SGL_RS01815at 91.687 kb on - strand, within SGL_RS01815at 92.252 kb on + strandat 92.393 kb on + strand, within SGL_RS01820at 92.401 kb on - strand, within SGL_RS01820at 92.459 kb on - strand, within SGL_RS01820at 92.488 kb on - strand, within SGL_RS01820at 92.612 kb on + strand, within SGL_RS01820at 92.687 kb on + strand, within SGL_RS01820at 92.789 kb on - strand, within SGL_RS01820at 92.803 kb on + strand, within SGL_RS01820at 92.853 kb on - strand, within SGL_RS01820at 92.860 kb on + strand, within SGL_RS01820at 92.898 kb on - strand, within SGL_RS01820at 92.910 kb on - strand, within SGL_RS01820at 93.213 kb on + strand, within SGL_RS01820at 93.221 kb on - strand, within SGL_RS01820

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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90,138 + SGL_RS19535 0.14 -1.0
90,236 + SGL_RS19535 0.23 +0.4
90,264 + SGL_RS19535 0.25 -0.5
90,265 + SGL_RS19535 0.25 -0.2
90,365 + SGL_RS19535 0.34 -1.2
90,371 + SGL_RS19535 0.35 -0.2
90,373 - SGL_RS19535 0.35 +0.5
90,469 + SGL_RS19535 0.43 -1.0
90,487 - SGL_RS19535 0.45 +0.1
90,502 + SGL_RS19535 0.46 +0.1
90,557 + SGL_RS19535 0.51 +1.3
90,563 + SGL_RS19535 0.52 -0.3
90,637 - SGL_RS19535 0.58 -0.4
90,640 + SGL_RS19535 0.59 -0.3
90,786 - SGL_RS19535 0.72 -0.1
90,828 + SGL_RS19535 0.75 +0.8
90,828 + SGL_RS19535 0.75 -0.0
90,829 - SGL_RS19535 0.75 -0.1
90,855 + SGL_RS19535 0.78 -0.2
90,863 + SGL_RS19535 0.79 +0.3
90,878 + SGL_RS19535 0.80 -0.3
90,885 - SGL_RS19535 0.80 +0.7
90,891 + SGL_RS19535 0.81 +0.1
91,561 + SGL_RS01815 0.39 +0.1
91,582 + SGL_RS01815 0.41 +0.6
91,582 + SGL_RS01815 0.41 -0.4
91,590 - SGL_RS01815 0.42 -0.0
91,590 - SGL_RS01815 0.42 +0.5
91,626 - SGL_RS01815 0.45 +0.0
91,633 + SGL_RS01815 0.45 -0.3
91,653 + SGL_RS01815 0.47 +0.6
91,679 + SGL_RS01815 0.49 +0.5
91,687 - SGL_RS01815 0.50 +1.1
92,252 + +0.3
92,393 + SGL_RS01820 0.12 +0.0
92,401 - SGL_RS01820 0.12 +0.6
92,459 - SGL_RS01820 0.18 -0.2
92,488 - SGL_RS01820 0.21 +0.3
92,612 + SGL_RS01820 0.32 -0.0
92,687 + SGL_RS01820 0.39 +0.4
92,789 - SGL_RS01820 0.48 -0.3
92,803 + SGL_RS01820 0.50 +0.3
92,853 - SGL_RS01820 0.54 +0.0
92,860 + SGL_RS01820 0.55 +1.0
92,898 - SGL_RS01820 0.59 -0.4
92,910 - SGL_RS01820 0.60 +0.7
93,213 + SGL_RS01820 0.88 +0.2
93,221 - SGL_RS01820 0.89 +0.0

Or see this region's nucleotide sequence