Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01375

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS01370 and SGL_RS20090 are separated by 45 nucleotidesSGL_RS20090 and SGL_RS01375 are separated by 271 nucleotidesSGL_RS01375 and SGL_RS19720 are separated by 99 nucleotidesSGL_RS19720 and SGL_RS19725 overlap by 31 nucleotidesSGL_RS19725 and SGL_RS01390 overlap by 61 nucleotides SGL_RS01370: SGL_RS01370 - hybrid sensor histidine kinase/response regulator, at 243 to 3,053 _RS01370 SGL_RS20090: SGL_RS20090 - hypothetical protein, at 3,099 to 3,233 _RS20090 SGL_RS01375: SGL_RS01375 - hypothetical protein, at 3,505 to 3,753 _RS01375 SGL_RS19720: SGL_RS19720 - hypothetical protein, at 3,853 to 4,080 _RS19720 SGL_RS19725: SGL_RS19725 - hypothetical protein, at 4,050 to 4,406 _RS19725 SGL_RS01390: SGL_RS01390 - ATP-binding protein, at 4,346 to 5,251 _RS01390 Position (kb) 3 4Strain fitness (log2 ratio) -1 0 1at 2.510 kb on - strand, within SGL_RS01370at 2.626 kb on + strand, within SGL_RS01370at 2.643 kb on + strand, within SGL_RS01370at 2.729 kb on - strand, within SGL_RS01370at 2.744 kb on + strand, within SGL_RS01370at 2.875 kb on - strandat 2.978 kb on + strandat 2.984 kb on + strandat 3.006 kb on - strandat 3.042 kb on + strandat 3.051 kb on - strandat 3.199 kb on - strand, within SGL_RS20090at 3.234 kb on + strandat 3.543 kb on + strand, within SGL_RS01375at 4.051 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
remove
2,510 - SGL_RS01370 0.81 +0.2
2,626 + SGL_RS01370 0.85 +0.2
2,643 + SGL_RS01370 0.85 +0.2
2,729 - SGL_RS01370 0.88 +0.6
2,744 + SGL_RS01370 0.89 -0.2
2,875 - +0.4
2,978 + +0.3
2,984 + +0.5
3,006 - +0.2
3,042 + +0.5
3,051 - +0.2
3,199 - SGL_RS20090 0.74 -0.7
3,234 + +0.1
3,543 + SGL_RS01375 0.15 +1.2
4,051 - -0.2

Or see this region's nucleotide sequence