Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18575 and SGL_RS01355 are separated by 299 nucleotides SGL_RS01355 and SGL_RS01360 overlap by 11 nucleotides
SGL_RS18575: SGL_RS18575 - IS630 family transposase, at 41,056 to 41,903
_RS18575
SGL_RS01355: SGL_RS01355 - SprT family zinc-dependent metalloprotease, at 42,203 to 42,913
_RS01355
SGL_RS01360: SGL_RS01360 - hypothetical protein, at 42,903 to 43,241
_RS01360
Position (kb) 42
43 Strain fitness (log2 ratio) -1
0
1
2 at 42.067 kb on + strand at 42.085 kb on - strand at 42.090 kb on - strand at 42.206 kb on + strand at 42.206 kb on + strand at 42.206 kb on + strand at 42.211 kb on + strand at 42.214 kb on - strand at 42.214 kb on - strand at 42.261 kb on - strand at 42.300 kb on - strand, within SGL_RS01355 at 42.337 kb on - strand, within SGL_RS01355 at 42.390 kb on + strand, within SGL_RS01355 at 42.465 kb on + strand, within SGL_RS01355 at 42.656 kb on - strand, within SGL_RS01355 at 42.712 kb on - strand, within SGL_RS01355 at 42.726 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.768 kb on + strand, within SGL_RS01355 at 42.776 kb on - strand, within SGL_RS01355 at 42.782 kb on - strand, within SGL_RS01355 at 42.790 kb on - strand, within SGL_RS01355 at 42.877 kb on - strand at 42.912 kb on + strand at 42.946 kb on + strand, within SGL_RS01360 at 42.980 kb on - strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.079 kb on + strand, within SGL_RS01360 at 43.192 kb on + strand, within SGL_RS01360 at 43.234 kb on - strand at 43.327 kb on - strand at 43.367 kb on - strand at 43.374 kb on + strand at 43.383 kb on + strand at 43.391 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.428 kb on - strand at 43.433 kb on - strand at 43.586 kb on + strand at 43.609 kb on + strand at 43.623 kb on + strand at 43.655 kb on + strand at 43.737 kb on + strand at 43.745 kb on - strand at 43.745 kb on - strand at 43.837 kb on - strand at 43.837 kb on - strand at 43.880 kb on + strand at 43.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 42,067 + -0.2 42,085 - -0.6 42,090 - +0.2 42,206 + +0.1 42,206 + +0.5 42,206 + -0.5 42,211 + -0.3 42,214 - +0.1 42,214 - +0.4 42,261 - -0.4 42,300 - SGL_RS01355 0.14 -0.1 42,337 - SGL_RS01355 0.19 +0.4 42,390 + SGL_RS01355 0.26 +1.4 42,465 + SGL_RS01355 0.37 +0.1 42,656 - SGL_RS01355 0.64 -0.6 42,712 - SGL_RS01355 0.72 +0.3 42,726 + SGL_RS01355 0.74 +0.3 42,768 + SGL_RS01355 0.79 -0.3 42,768 + SGL_RS01355 0.79 +1.1 42,768 + SGL_RS01355 0.79 +0.1 42,776 - SGL_RS01355 0.81 -0.1 42,782 - SGL_RS01355 0.81 +1.4 42,790 - SGL_RS01355 0.83 +0.1 42,877 - +0.5 42,912 + -0.6 42,946 + SGL_RS01360 0.13 +0.2 42,980 - SGL_RS01360 0.23 -1.3 43,079 + SGL_RS01360 0.52 +0.5 43,079 + SGL_RS01360 0.52 -0.8 43,079 + SGL_RS01360 0.52 -0.1 43,079 + SGL_RS01360 0.52 +0.3 43,192 + SGL_RS01360 0.85 -1.0 43,234 - +0.3 43,327 - +0.7 43,367 - +0.0 43,374 + -0.1 43,383 + +0.3 43,391 - +0.3 43,428 - +0.0 43,428 - +0.1 43,428 - -1.1 43,428 - -0.5 43,433 - -0.1 43,586 + +2.7 43,609 + -0.2 43,623 + +1.0 43,655 + +0.0 43,737 + +0.9 43,745 - +0.2 43,745 - +0.2 43,837 - +0.2 43,837 - +0.9 43,880 + +0.6 43,886 + +0.6
Or see this region's nucleotide sequence