Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01155 and SGL_RS01160 overlap by 4 nucleotides SGL_RS01160 and SGL_RS01165 overlap by 17 nucleotides SGL_RS01165 and SGL_RS01170 are separated by 50 nucleotides
SGL_RS01155: SGL_RS01155 - restriction endonuclease subunit S, at 4,652 to 6,046
_RS01155
SGL_RS01160: SGL_RS01160 - DUF5615 family PIN-like protein, at 6,043 to 6,393
_RS01160
SGL_RS01165: SGL_RS01165 - DUF433 domain-containing protein, at 6,377 to 6,601
_RS01165
SGL_RS01170: SGL_RS01170 - class I SAM-dependent DNA methyltransferase, at 6,652 to 8,619
_RS01170
Position (kb) 6
7 Strain fitness (log2 ratio) -1
0
1 at 5.140 kb on - strand, within SGL_RS01155 at 5.365 kb on + strand, within SGL_RS01155 at 5.611 kb on + strand, within SGL_RS01155 at 5.611 kb on + strand, within SGL_RS01155 at 5.612 kb on + strand, within SGL_RS01155 at 5.652 kb on - strand, within SGL_RS01155 at 6.015 kb on - strand at 6.027 kb on + strand at 6.064 kb on + strand at 6.115 kb on - strand, within SGL_RS01160 at 6.209 kb on - strand, within SGL_RS01160 at 6.368 kb on - strand at 6.375 kb on + strand at 6.739 kb on + strand at 6.816 kb on + strand at 6.829 kb on + strand at 6.829 kb on + strand at 6.837 kb on - strand at 6.837 kb on - strand at 6.924 kb on + strand, within SGL_RS01170 at 6.924 kb on + strand, within SGL_RS01170 at 6.930 kb on - strand, within SGL_RS01170 at 6.937 kb on - strand, within SGL_RS01170 at 6.942 kb on - strand, within SGL_RS01170 at 6.954 kb on - strand, within SGL_RS01170 at 6.977 kb on - strand, within SGL_RS01170 at 7.208 kb on + strand, within SGL_RS01170 at 7.258 kb on - strand, within SGL_RS01170 at 7.266 kb on + strand, within SGL_RS01170 at 7.273 kb on - strand, within SGL_RS01170 at 7.275 kb on + strand, within SGL_RS01170 at 7.299 kb on - strand, within SGL_RS01170 at 7.304 kb on - strand, within SGL_RS01170 at 7.304 kb on - strand, within SGL_RS01170 at 7.306 kb on - strand, within SGL_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation remove 5,140 - SGL_RS01155 0.35 -0.0 5,365 + SGL_RS01155 0.51 +0.2 5,611 + SGL_RS01155 0.69 +0.0 5,611 + SGL_RS01155 0.69 -0.8 5,612 + SGL_RS01155 0.69 +0.5 5,652 - SGL_RS01155 0.72 -0.0 6,015 - -0.1 6,027 + +1.1 6,064 + -0.2 6,115 - SGL_RS01160 0.21 +0.7 6,209 - SGL_RS01160 0.47 +0.0 6,368 - +0.5 6,375 + +0.4 6,739 + +0.5 6,816 + +0.3 6,829 + -0.5 6,829 + +0.3 6,837 - -1.3 6,837 - +0.5 6,924 + SGL_RS01170 0.14 +1.2 6,924 + SGL_RS01170 0.14 -0.6 6,930 - SGL_RS01170 0.14 +0.5 6,937 - SGL_RS01170 0.14 -0.5 6,942 - SGL_RS01170 0.15 -0.7 6,954 - SGL_RS01170 0.15 -0.7 6,977 - SGL_RS01170 0.17 -0.6 7,208 + SGL_RS01170 0.28 -0.6 7,258 - SGL_RS01170 0.31 +0.5 7,266 + SGL_RS01170 0.31 -0.9 7,273 - SGL_RS01170 0.32 -0.8 7,275 + SGL_RS01170 0.32 +0.4 7,299 - SGL_RS01170 0.33 +1.0 7,304 - SGL_RS01170 0.33 +1.0 7,304 - SGL_RS01170 0.33 +0.2 7,306 - SGL_RS01170 0.33 -0.7
Or see this region's nucleotide sequence