Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00605

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00600 and SGL_RS00605 are separated by 218 nucleotidesSGL_RS00605 and SGL_RS00610 are separated by 95 nucleotidesSGL_RS00610 and SGL_RS00615 are separated by 55 nucleotidesSGL_RS00615 and SGL_RS00620 are separated by 51 nucleotides SGL_RS00600: SGL_RS00600 - hypothetical protein, at 114,514 to 115,284 _RS00600 SGL_RS00605: SGL_RS00605 - hypothetical protein, at 115,503 to 116,540 _RS00605 SGL_RS00610: SGL_RS00610 - hypothetical protein, at 116,636 to 116,830 _RS00610 SGL_RS00615: SGL_RS00615 - DUF1524 domain-containing protein, at 116,886 to 117,293 _RS00615 SGL_RS00620: SGL_RS00620 - IS4-like element IS4Sa family transposase, at 117,345 to 118,361 _RS00620 Position (kb) 115 116 117Strain fitness (log2 ratio) -1 0 1at 114.692 kb on - strand, within SGL_RS00600at 115.255 kb on + strandat 115.366 kb on + strandat 116.246 kb on + strand, within SGL_RS00605at 116.263 kb on + strand, within SGL_RS00605at 116.295 kb on + strand, within SGL_RS00605at 116.647 kb on + strandat 117.028 kb on - strand, within SGL_RS00615at 117.126 kb on + strand, within SGL_RS00615at 117.134 kb on - strand, within SGL_RS00615at 117.135 kb on - strand, within SGL_RS00615at 117.140 kb on + strand, within SGL_RS00615at 117.146 kb on - strand, within SGL_RS00615

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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114,692 - SGL_RS00600 0.23 -0.1
115,255 + -0.3
115,366 + -0.1
116,246 + SGL_RS00605 0.72 -0.1
116,263 + SGL_RS00605 0.73 +0.2
116,295 + SGL_RS00605 0.76 +1.0
116,647 + +0.2
117,028 - SGL_RS00615 0.35 +0.4
117,126 + SGL_RS00615 0.59 -0.2
117,134 - SGL_RS00615 0.61 -1.0
117,135 - SGL_RS00615 0.61 +0.3
117,140 + SGL_RS00615 0.62 -0.3
117,146 - SGL_RS00615 0.64 +0.3

Or see this region's nucleotide sequence