Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00305

Experiment: growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18485 and SGL_RS00295 are separated by 90 nucleotidesSGL_RS00295 and SGL_RS00300 overlap by 17 nucleotidesSGL_RS00300 and SGL_RS00305 are separated by 73 nucleotidesSGL_RS00305 and SGL_RS19300 are separated by 329 nucleotidesSGL_RS19300 and SGL_RS18490 overlap by 53 nucleotidesSGL_RS18490 and SGL_RS00315 overlap by 74 nucleotides SGL_RS18485: SGL_RS18485 - HNH endonuclease, at 66,782 to 67,072 _RS18485 SGL_RS00295: SGL_RS00295 - hypothetical protein, at 67,163 to 67,378 _RS00295 SGL_RS00300: SGL_RS00300 - ParA family protein, at 67,362 to 67,976 _RS00300 SGL_RS00305: SGL_RS00305 - ATP-binding protein, at 68,050 to 68,574 _RS00305 SGL_RS19300: SGL_RS19300 - hypothetical protein, at 68,904 to 69,296 _RS19300 SGL_RS18490: SGL_RS18490 - hypothetical protein, at 69,244 to 69,408 _RS18490 SGL_RS00315: SGL_RS00315 - hypothetical protein, at 69,335 to 70,810 _RS00315 Position (kb) 68 69Strain fitness (log2 ratio) -2 -1 0 1at 67.112 kb on - strandat 67.144 kb on + strandat 67.216 kb on + strand, within SGL_RS00295at 67.261 kb on + strand, within SGL_RS00295at 67.261 kb on + strand, within SGL_RS00295at 67.269 kb on - strand, within SGL_RS00295at 67.335 kb on + strand, within SGL_RS00295at 67.341 kb on + strand, within SGL_RS00295at 67.343 kb on - strand, within SGL_RS00295at 67.349 kb on - strand, within SGL_RS00295at 67.370 kb on - strandat 67.451 kb on - strand, within SGL_RS00300at 67.456 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.477 kb on + strand, within SGL_RS00300at 67.548 kb on + strand, within SGL_RS00300at 67.549 kb on - strand, within SGL_RS00300at 67.573 kb on + strand, within SGL_RS00300at 67.581 kb on - strand, within SGL_RS00300at 67.581 kb on - strand, within SGL_RS00300at 67.591 kb on - strand, within SGL_RS00300at 67.620 kb on - strand, within SGL_RS00300at 67.645 kb on - strand, within SGL_RS00300at 67.658 kb on - strand, within SGL_RS00300at 67.690 kb on - strand, within SGL_RS00300at 67.783 kb on + strand, within SGL_RS00300at 67.857 kb on + strand, within SGL_RS00300at 67.861 kb on + strand, within SGL_RS00300at 67.862 kb on + strand, within SGL_RS00300at 67.947 kb on + strandat 68.309 kb on + strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.317 kb on - strand, within SGL_RS00305at 68.427 kb on - strand, within SGL_RS00305at 68.548 kb on + strandat 68.564 kb on + strandat 68.564 kb on + strandat 68.582 kb on + strandat 68.582 kb on + strandat 68.590 kb on - strandat 68.590 kb on - strandat 68.590 kb on - strandat 68.660 kb on - strandat 68.694 kb on - strandat 68.882 kb on - strandat 68.888 kb on - strandat 68.967 kb on + strand, within SGL_RS19300at 69.318 kb on + strand, within SGL_RS18490at 69.479 kb on + strandat 69.479 kb on + strandat 69.497 kb on - strand, within SGL_RS00315at 69.508 kb on + strand, within SGL_RS00315

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with air enriched in 1% CO2 but diluted to prevent light attenuation
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67,112 - +0.2
67,144 + +0.6
67,216 + SGL_RS00295 0.25 +0.2
67,261 + SGL_RS00295 0.45 -1.6
67,261 + SGL_RS00295 0.45 -0.8
67,269 - SGL_RS00295 0.49 -0.2
67,335 + SGL_RS00295 0.80 +0.4
67,341 + SGL_RS00295 0.82 -0.7
67,343 - SGL_RS00295 0.83 -0.1
67,349 - SGL_RS00295 0.86 -0.5
67,370 - -0.4
67,451 - SGL_RS00300 0.14 -0.2
67,456 + SGL_RS00300 0.15 -0.3
67,477 + SGL_RS00300 0.19 +0.4
67,477 + SGL_RS00300 0.19 +0.5
67,477 + SGL_RS00300 0.19 -0.3
67,548 + SGL_RS00300 0.30 +0.2
67,549 - SGL_RS00300 0.30 -0.1
67,573 + SGL_RS00300 0.34 -1.2
67,581 - SGL_RS00300 0.36 -0.2
67,581 - SGL_RS00300 0.36 +0.5
67,591 - SGL_RS00300 0.37 -0.4
67,620 - SGL_RS00300 0.42 +0.1
67,645 - SGL_RS00300 0.46 -0.0
67,658 - SGL_RS00300 0.48 -0.3
67,690 - SGL_RS00300 0.53 +0.2
67,783 + SGL_RS00300 0.68 -0.0
67,857 + SGL_RS00300 0.80 +0.4
67,861 + SGL_RS00300 0.81 +0.2
67,862 + SGL_RS00300 0.81 +0.1
67,947 + +0.7
68,309 + SGL_RS00305 0.49 -0.0
68,317 - SGL_RS00305 0.51 -0.1
68,317 - SGL_RS00305 0.51 +0.1
68,317 - SGL_RS00305 0.51 +0.4
68,317 - SGL_RS00305 0.51 +0.9
68,427 - SGL_RS00305 0.72 +0.2
68,548 + -0.4
68,564 + -0.1
68,564 + +0.0
68,582 + +0.2
68,582 + +0.2
68,590 - -0.6
68,590 - -0.2
68,590 - +0.3
68,660 - +0.2
68,694 - -0.2
68,882 - +0.2
68,888 - -0.6
68,967 + SGL_RS19300 0.16 +0.3
69,318 + SGL_RS18490 0.45 -0.5
69,479 + -0.4
69,479 + -2.0
69,497 - SGL_RS00315 0.11 -0.0
69,508 + SGL_RS00315 0.12 +1.6

Or see this region's nucleotide sequence