Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18225

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18215 and SGL_RS18220 are separated by 231 nucleotidesSGL_RS18220 and SGL_RS18225 are separated by 38 nucleotidesSGL_RS18225 and SGL_RS18230 are separated by 108 nucleotidesSGL_RS18230 and SGL_RS18235 are separated by 113 nucleotides SGL_RS18215: SGL_RS18215 - pentapeptide repeat-containing protein, at 3,537,706 to 3,538,215 _RS18215 SGL_RS18220: SGL_RS18220 - hypothetical protein, at 3,538,447 to 3,538,803 _RS18220 SGL_RS18225: SGL_RS18225 - cofactor assembly of complex C subunit B, at 3,538,842 to 3,539,387 _RS18225 SGL_RS18230: SGL_RS18230 - DUF2993 domain-containing protein, at 3,539,496 to 3,540,212 _RS18230 SGL_RS18235: SGL_RS18235 - NAD-dependent epimerase/dehydratase, at 3,540,326 to 3,541,258 _RS18235 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3537.918 kb on - strand, within SGL_RS18215at 3538.064 kb on - strand, within SGL_RS18215at 3538.152 kb on - strand, within SGL_RS18215at 3538.182 kb on + strandat 3538.315 kb on - strandat 3538.329 kb on - strandat 3538.421 kb on - strandat 3539.037 kb on - strand, within SGL_RS18225at 3539.070 kb on + strand, within SGL_RS18225at 3539.124 kb on - strand, within SGL_RS18225at 3539.139 kb on - strand, within SGL_RS18225at 3539.214 kb on + strand, within SGL_RS18225at 3539.247 kb on - strand, within SGL_RS18225at 3539.632 kb on + strand, within SGL_RS18230at 3539.647 kb on - strand, within SGL_RS18230at 3539.997 kb on + strand, within SGL_RS18230at 3540.041 kb on - strand, within SGL_RS18230

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,537,918 - SGL_RS18215 0.42 -3.5
3,538,064 - SGL_RS18215 0.70 -2.0
3,538,152 - SGL_RS18215 0.87 -2.1
3,538,182 + -2.5
3,538,315 - -0.2
3,538,329 - +0.1
3,538,421 - +1.0
3,539,037 - SGL_RS18225 0.36 +0.7
3,539,070 + SGL_RS18225 0.42 +1.7
3,539,124 - SGL_RS18225 0.52 +1.0
3,539,139 - SGL_RS18225 0.54 +2.0
3,539,214 + SGL_RS18225 0.68 +0.9
3,539,247 - SGL_RS18225 0.74 +1.0
3,539,632 + SGL_RS18230 0.19 -1.6
3,539,647 - SGL_RS18230 0.21 -2.6
3,539,997 + SGL_RS18230 0.70 -2.0
3,540,041 - SGL_RS18230 0.76 -0.8

Or see this region's nucleotide sequence