Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17875 and SGL_RS17880 are separated by 137 nucleotides SGL_RS17880 and SGL_RS17885 are separated by 176 nucleotides
SGL_RS17875: SGL_RS17875 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,465,791 to 3,467,743
_RS17875
SGL_RS17880: SGL_RS17880 - glutathione S-transferase family protein, at 3,467,881 to 3,468,696
_RS17880
SGL_RS17885: SGL_RS17885 - NAD-binding protein, at 3,468,873 to 3,470,885
_RS17885
Position (kb)
3467
3468
3469 Strain fitness (log2 ratio)
-1
0
1 at 3466.944 kb on + strand, within SGL_RS17875 at 3467.019 kb on - strand, within SGL_RS17875 at 3467.135 kb on + strand, within SGL_RS17875 at 3467.140 kb on + strand, within SGL_RS17875 at 3467.140 kb on + strand, within SGL_RS17875 at 3467.148 kb on - strand, within SGL_RS17875 at 3467.150 kb on - strand, within SGL_RS17875 at 3467.242 kb on - strand, within SGL_RS17875 at 3467.242 kb on - strand, within SGL_RS17875 at 3467.467 kb on - strand, within SGL_RS17875 at 3467.467 kb on - strand, within SGL_RS17875 at 3467.467 kb on - strand, within SGL_RS17875 at 3467.525 kb on + strand, within SGL_RS17875 at 3467.525 kb on + strand, within SGL_RS17875 at 3467.525 kb on + strand, within SGL_RS17875 at 3467.525 kb on + strand, within SGL_RS17875 at 3467.527 kb on + strand, within SGL_RS17875 at 3467.533 kb on - strand, within SGL_RS17875 at 3467.533 kb on - strand, within SGL_RS17875 at 3467.533 kb on - strand, within SGL_RS17875 at 3467.533 kb on - strand, within SGL_RS17875 at 3467.533 kb on - strand, within SGL_RS17875 at 3467.535 kb on - strand, within SGL_RS17875 at 3467.594 kb on - strand at 3467.708 kb on - strand at 3467.883 kb on + strand at 3467.914 kb on - strand at 3467.952 kb on + strand at 3468.007 kb on + strand, within SGL_RS17880 at 3468.012 kb on + strand, within SGL_RS17880 at 3468.049 kb on - strand, within SGL_RS17880 at 3468.279 kb on + strand, within SGL_RS17880 at 3468.375 kb on - strand, within SGL_RS17880 at 3468.498 kb on - strand, within SGL_RS17880 at 3468.526 kb on + strand, within SGL_RS17880 at 3468.541 kb on - strand, within SGL_RS17880 at 3468.593 kb on - strand, within SGL_RS17880 at 3468.725 kb on - strand at 3469.291 kb on + strand, within SGL_RS17885 at 3469.291 kb on + strand, within SGL_RS17885 at 3469.359 kb on - strand, within SGL_RS17885 at 3469.405 kb on + strand, within SGL_RS17885 at 3469.438 kb on - strand, within SGL_RS17885
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 3,466,944 + SGL_RS17875 0.59 -0.4 3,467,019 - SGL_RS17875 0.63 -0.2 3,467,135 + SGL_RS17875 0.69 +0.5 3,467,140 + SGL_RS17875 0.69 +1.7 3,467,140 + SGL_RS17875 0.69 +0.2 3,467,148 - SGL_RS17875 0.69 +0.1 3,467,150 - SGL_RS17875 0.70 +0.0 3,467,242 - SGL_RS17875 0.74 +0.6 3,467,242 - SGL_RS17875 0.74 +1.0 3,467,467 - SGL_RS17875 0.86 -0.5 3,467,467 - SGL_RS17875 0.86 +0.3 3,467,467 - SGL_RS17875 0.86 -1.2 3,467,525 + SGL_RS17875 0.89 -0.0 3,467,525 + SGL_RS17875 0.89 -0.2 3,467,525 + SGL_RS17875 0.89 -0.3 3,467,525 + SGL_RS17875 0.89 -1.1 3,467,527 + SGL_RS17875 0.89 +0.0 3,467,533 - SGL_RS17875 0.89 +0.1 3,467,533 - SGL_RS17875 0.89 +0.1 3,467,533 - SGL_RS17875 0.89 +0.1 3,467,533 - SGL_RS17875 0.89 +0.0 3,467,533 - SGL_RS17875 0.89 +0.2 3,467,535 - SGL_RS17875 0.89 -0.1 3,467,594 - +0.0 3,467,708 - -0.2 3,467,883 + -1.0 3,467,914 - +0.9 3,467,952 + -0.0 3,468,007 + SGL_RS17880 0.15 -0.5 3,468,012 + SGL_RS17880 0.16 +0.2 3,468,049 - SGL_RS17880 0.21 -0.5 3,468,279 + SGL_RS17880 0.49 +0.1 3,468,375 - SGL_RS17880 0.61 +0.4 3,468,498 - SGL_RS17880 0.76 -0.0 3,468,526 + SGL_RS17880 0.79 +0.2 3,468,541 - SGL_RS17880 0.81 +0.7 3,468,593 - SGL_RS17880 0.87 +0.1 3,468,725 - -1.0 3,469,291 + SGL_RS17885 0.21 -0.1 3,469,291 + SGL_RS17885 0.21 -0.5 3,469,359 - SGL_RS17885 0.24 +0.1 3,469,405 + SGL_RS17885 0.26 +0.5 3,469,438 - SGL_RS17885 0.28 +0.6
Or see this region's nucleotide sequence