Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17880

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17875 and SGL_RS17880 are separated by 137 nucleotidesSGL_RS17880 and SGL_RS17885 are separated by 176 nucleotides SGL_RS17875: SGL_RS17875 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,465,791 to 3,467,743 _RS17875 SGL_RS17880: SGL_RS17880 - glutathione S-transferase family protein, at 3,467,881 to 3,468,696 _RS17880 SGL_RS17885: SGL_RS17885 - NAD-binding protein, at 3,468,873 to 3,470,885 _RS17885 Position (kb) 3467 3468 3469Strain fitness (log2 ratio) -1 0 1at 3466.944 kb on + strand, within SGL_RS17875at 3467.019 kb on - strand, within SGL_RS17875at 3467.135 kb on + strand, within SGL_RS17875at 3467.140 kb on + strand, within SGL_RS17875at 3467.140 kb on + strand, within SGL_RS17875at 3467.148 kb on - strand, within SGL_RS17875at 3467.150 kb on - strand, within SGL_RS17875at 3467.242 kb on - strand, within SGL_RS17875at 3467.242 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.527 kb on + strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.535 kb on - strand, within SGL_RS17875at 3467.594 kb on - strandat 3467.708 kb on - strandat 3467.883 kb on + strandat 3467.914 kb on - strandat 3467.952 kb on + strandat 3468.007 kb on + strand, within SGL_RS17880at 3468.012 kb on + strand, within SGL_RS17880at 3468.049 kb on - strand, within SGL_RS17880at 3468.279 kb on + strand, within SGL_RS17880at 3468.375 kb on - strand, within SGL_RS17880at 3468.498 kb on - strand, within SGL_RS17880at 3468.526 kb on + strand, within SGL_RS17880at 3468.541 kb on - strand, within SGL_RS17880at 3468.593 kb on - strand, within SGL_RS17880at 3468.725 kb on - strandat 3469.291 kb on + strand, within SGL_RS17885at 3469.291 kb on + strand, within SGL_RS17885at 3469.359 kb on - strand, within SGL_RS17885at 3469.405 kb on + strand, within SGL_RS17885at 3469.438 kb on - strand, within SGL_RS17885

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,466,944 + SGL_RS17875 0.59 -0.4
3,467,019 - SGL_RS17875 0.63 -0.2
3,467,135 + SGL_RS17875 0.69 +0.5
3,467,140 + SGL_RS17875 0.69 +1.7
3,467,140 + SGL_RS17875 0.69 +0.2
3,467,148 - SGL_RS17875 0.69 +0.1
3,467,150 - SGL_RS17875 0.70 +0.0
3,467,242 - SGL_RS17875 0.74 +0.6
3,467,242 - SGL_RS17875 0.74 +1.0
3,467,467 - SGL_RS17875 0.86 -0.5
3,467,467 - SGL_RS17875 0.86 +0.3
3,467,467 - SGL_RS17875 0.86 -1.2
3,467,525 + SGL_RS17875 0.89 -0.0
3,467,525 + SGL_RS17875 0.89 -0.2
3,467,525 + SGL_RS17875 0.89 -0.3
3,467,525 + SGL_RS17875 0.89 -1.1
3,467,527 + SGL_RS17875 0.89 +0.0
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.0
3,467,533 - SGL_RS17875 0.89 +0.2
3,467,535 - SGL_RS17875 0.89 -0.1
3,467,594 - +0.0
3,467,708 - -0.2
3,467,883 + -1.0
3,467,914 - +0.9
3,467,952 + -0.0
3,468,007 + SGL_RS17880 0.15 -0.5
3,468,012 + SGL_RS17880 0.16 +0.2
3,468,049 - SGL_RS17880 0.21 -0.5
3,468,279 + SGL_RS17880 0.49 +0.1
3,468,375 - SGL_RS17880 0.61 +0.4
3,468,498 - SGL_RS17880 0.76 -0.0
3,468,526 + SGL_RS17880 0.79 +0.2
3,468,541 - SGL_RS17880 0.81 +0.7
3,468,593 - SGL_RS17880 0.87 +0.1
3,468,725 - -1.0
3,469,291 + SGL_RS17885 0.21 -0.1
3,469,291 + SGL_RS17885 0.21 -0.5
3,469,359 - SGL_RS17885 0.24 +0.1
3,469,405 + SGL_RS17885 0.26 +0.5
3,469,438 - SGL_RS17885 0.28 +0.6

Or see this region's nucleotide sequence