Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17875

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17865 and SGL_RS17875 are separated by 501 nucleotidesSGL_RS17875 and SGL_RS17880 are separated by 137 nucleotides SGL_RS17865: SGL_RS17865 - Ppx/GppA phosphatase family protein, at 3,463,667 to 3,465,289 _RS17865 SGL_RS17875: SGL_RS17875 - ShlB/FhaC/HecB family hemolysin secretion/activation protein, at 3,465,791 to 3,467,743 _RS17875 SGL_RS17880: SGL_RS17880 - glutathione S-transferase family protein, at 3,467,881 to 3,468,696 _RS17880 Position (kb) 3465 3466 3467 3468Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3465.032 kb on - strand, within SGL_RS17865at 3465.042 kb on + strand, within SGL_RS17865at 3465.050 kb on - strand, within SGL_RS17865at 3465.056 kb on - strand, within SGL_RS17865at 3465.113 kb on - strand, within SGL_RS17865at 3465.260 kb on - strandat 3465.292 kb on - strandat 3465.293 kb on - strandat 3465.311 kb on - strandat 3465.342 kb on - strandat 3465.344 kb on + strandat 3465.357 kb on - strandat 3465.375 kb on - strandat 3465.405 kb on - strandat 3465.422 kb on - strandat 3465.443 kb on + strandat 3465.552 kb on + strandat 3465.558 kb on + strandat 3465.558 kb on + strandat 3465.560 kb on - strandat 3465.588 kb on - strandat 3465.682 kb on + strandat 3465.755 kb on + strandat 3465.770 kb on + strandat 3465.781 kb on + strandat 3465.781 kb on + strandat 3465.812 kb on - strandat 3465.896 kb on - strandat 3465.955 kb on + strandat 3466.008 kb on - strand, within SGL_RS17875at 3466.030 kb on - strand, within SGL_RS17875at 3466.179 kb on + strand, within SGL_RS17875at 3466.269 kb on - strand, within SGL_RS17875at 3466.269 kb on - strand, within SGL_RS17875at 3466.314 kb on - strand, within SGL_RS17875at 3466.364 kb on - strand, within SGL_RS17875at 3466.364 kb on - strand, within SGL_RS17875at 3466.364 kb on - strand, within SGL_RS17875at 3466.364 kb on - strand, within SGL_RS17875at 3466.364 kb on - strand, within SGL_RS17875at 3466.366 kb on + strand, within SGL_RS17875at 3466.367 kb on - strand, within SGL_RS17875at 3466.369 kb on - strand, within SGL_RS17875at 3466.378 kb on + strand, within SGL_RS17875at 3466.386 kb on - strand, within SGL_RS17875at 3466.386 kb on - strand, within SGL_RS17875at 3466.425 kb on - strand, within SGL_RS17875at 3466.646 kb on + strand, within SGL_RS17875at 3466.677 kb on + strand, within SGL_RS17875at 3466.691 kb on + strand, within SGL_RS17875at 3466.758 kb on + strand, within SGL_RS17875at 3466.770 kb on + strand, within SGL_RS17875at 3466.770 kb on + strand, within SGL_RS17875at 3466.770 kb on + strand, within SGL_RS17875at 3466.800 kb on + strand, within SGL_RS17875at 3466.944 kb on + strand, within SGL_RS17875at 3467.019 kb on - strand, within SGL_RS17875at 3467.135 kb on + strand, within SGL_RS17875at 3467.140 kb on + strand, within SGL_RS17875at 3467.140 kb on + strand, within SGL_RS17875at 3467.148 kb on - strand, within SGL_RS17875at 3467.150 kb on - strand, within SGL_RS17875at 3467.242 kb on - strand, within SGL_RS17875at 3467.242 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.467 kb on - strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.525 kb on + strand, within SGL_RS17875at 3467.527 kb on + strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.533 kb on - strand, within SGL_RS17875at 3467.535 kb on - strand, within SGL_RS17875at 3467.594 kb on - strandat 3467.708 kb on - strandat 3467.883 kb on + strandat 3467.914 kb on - strandat 3467.952 kb on + strandat 3468.007 kb on + strand, within SGL_RS17880at 3468.012 kb on + strand, within SGL_RS17880at 3468.049 kb on - strand, within SGL_RS17880at 3468.279 kb on + strand, within SGL_RS17880at 3468.375 kb on - strand, within SGL_RS17880at 3468.498 kb on - strand, within SGL_RS17880at 3468.526 kb on + strand, within SGL_RS17880at 3468.541 kb on - strand, within SGL_RS17880at 3468.593 kb on - strand, within SGL_RS17880at 3468.725 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,465,032 - SGL_RS17865 0.84 +1.9
3,465,042 + SGL_RS17865 0.85 +1.2
3,465,050 - SGL_RS17865 0.85 +0.8
3,465,056 - SGL_RS17865 0.86 +1.4
3,465,113 - SGL_RS17865 0.89 +1.8
3,465,260 - +1.3
3,465,292 - +0.4
3,465,293 - +0.6
3,465,311 - +0.7
3,465,342 - +1.1
3,465,344 + +0.7
3,465,357 - +1.4
3,465,375 - +0.9
3,465,405 - -0.3
3,465,422 - +0.1
3,465,443 + +0.2
3,465,552 + +0.1
3,465,558 + +0.1
3,465,558 + -0.8
3,465,560 - -0.9
3,465,588 - +0.0
3,465,682 + +0.5
3,465,755 + -0.2
3,465,770 + -0.9
3,465,781 + -0.2
3,465,781 + +0.4
3,465,812 - -0.5
3,465,896 - -0.3
3,465,955 + -0.2
3,466,008 - SGL_RS17875 0.11 +0.2
3,466,030 - SGL_RS17875 0.12 +0.6
3,466,179 + SGL_RS17875 0.20 -0.2
3,466,269 - SGL_RS17875 0.24 +0.3
3,466,269 - SGL_RS17875 0.24 +3.4
3,466,314 - SGL_RS17875 0.27 -0.6
3,466,364 - SGL_RS17875 0.29 +0.1
3,466,364 - SGL_RS17875 0.29 +0.7
3,466,364 - SGL_RS17875 0.29 +0.0
3,466,364 - SGL_RS17875 0.29 -0.0
3,466,364 - SGL_RS17875 0.29 -0.4
3,466,366 + SGL_RS17875 0.29 -2.0
3,466,367 - SGL_RS17875 0.29 -0.0
3,466,369 - SGL_RS17875 0.30 +0.8
3,466,378 + SGL_RS17875 0.30 +0.2
3,466,386 - SGL_RS17875 0.30 -1.4
3,466,386 - SGL_RS17875 0.30 +1.6
3,466,425 - SGL_RS17875 0.32 +0.1
3,466,646 + SGL_RS17875 0.44 -0.4
3,466,677 + SGL_RS17875 0.45 -0.8
3,466,691 + SGL_RS17875 0.46 +0.2
3,466,758 + SGL_RS17875 0.50 +0.0
3,466,770 + SGL_RS17875 0.50 -0.3
3,466,770 + SGL_RS17875 0.50 +0.5
3,466,770 + SGL_RS17875 0.50 +0.1
3,466,800 + SGL_RS17875 0.52 +0.6
3,466,944 + SGL_RS17875 0.59 -0.4
3,467,019 - SGL_RS17875 0.63 -0.2
3,467,135 + SGL_RS17875 0.69 +0.5
3,467,140 + SGL_RS17875 0.69 +1.7
3,467,140 + SGL_RS17875 0.69 +0.2
3,467,148 - SGL_RS17875 0.69 +0.1
3,467,150 - SGL_RS17875 0.70 +0.0
3,467,242 - SGL_RS17875 0.74 +0.6
3,467,242 - SGL_RS17875 0.74 +1.0
3,467,467 - SGL_RS17875 0.86 -0.5
3,467,467 - SGL_RS17875 0.86 +0.3
3,467,467 - SGL_RS17875 0.86 -1.2
3,467,525 + SGL_RS17875 0.89 -0.0
3,467,525 + SGL_RS17875 0.89 -0.2
3,467,525 + SGL_RS17875 0.89 -0.3
3,467,525 + SGL_RS17875 0.89 -1.1
3,467,527 + SGL_RS17875 0.89 +0.0
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.1
3,467,533 - SGL_RS17875 0.89 +0.0
3,467,533 - SGL_RS17875 0.89 +0.2
3,467,535 - SGL_RS17875 0.89 -0.1
3,467,594 - +0.0
3,467,708 - -0.2
3,467,883 + -1.0
3,467,914 - +0.9
3,467,952 + -0.0
3,468,007 + SGL_RS17880 0.15 -0.5
3,468,012 + SGL_RS17880 0.16 +0.2
3,468,049 - SGL_RS17880 0.21 -0.5
3,468,279 + SGL_RS17880 0.49 +0.1
3,468,375 - SGL_RS17880 0.61 +0.4
3,468,498 - SGL_RS17880 0.76 -0.0
3,468,526 + SGL_RS17880 0.79 +0.2
3,468,541 - SGL_RS17880 0.81 +0.7
3,468,593 - SGL_RS17880 0.87 +0.1
3,468,725 - -1.0

Or see this region's nucleotide sequence