Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17755

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17750 and SGL_RS17755 are separated by 126 nucleotidesSGL_RS17755 and SGL_RS17760 are separated by 170 nucleotides SGL_RS17750: SGL_RS17750 - circadian clock protein KaiA, at 3,433,362 to 3,434,261 _RS17750 SGL_RS17755: SGL_RS17755 - circadian clock protein KaiB, at 3,434,388 to 3,434,705 _RS17755 SGL_RS17760: SGL_RS17760 - circadian clock protein KaiC, at 3,434,876 to 3,436,435 _RS17760 Position (kb) 3434 3435Strain fitness (log2 ratio) -1 0 1 2 3at 3433.415 kb on + strandat 3433.449 kb on - strandat 3433.493 kb on + strand, within SGL_RS17750at 3433.630 kb on - strand, within SGL_RS17750at 3433.647 kb on + strand, within SGL_RS17750at 3433.651 kb on - strand, within SGL_RS17750at 3433.698 kb on + strand, within SGL_RS17750at 3433.710 kb on + strand, within SGL_RS17750at 3433.751 kb on + strand, within SGL_RS17750at 3433.759 kb on - strand, within SGL_RS17750at 3433.824 kb on - strand, within SGL_RS17750at 3434.447 kb on - strand, within SGL_RS17755at 3434.525 kb on - strand, within SGL_RS17755at 3434.661 kb on - strand, within SGL_RS17755at 3434.997 kb on + strandat 3435.002 kb on + strandat 3435.010 kb on - strandat 3435.270 kb on + strand, within SGL_RS17760at 3435.306 kb on + strand, within SGL_RS17760at 3435.387 kb on + strand, within SGL_RS17760at 3435.395 kb on - strand, within SGL_RS17760at 3435.397 kb on + strand, within SGL_RS17760at 3435.558 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.641 kb on + strand, within SGL_RS17760at 3435.649 kb on - strand, within SGL_RS17760at 3435.649 kb on - strand, within SGL_RS17760

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,433,415 + +3.3
3,433,449 - +3.2
3,433,493 + SGL_RS17750 0.15 +3.3
3,433,630 - SGL_RS17750 0.30 +3.2
3,433,647 + SGL_RS17750 0.32 +2.9
3,433,651 - SGL_RS17750 0.32 +3.0
3,433,698 + SGL_RS17750 0.37 +2.7
3,433,710 + SGL_RS17750 0.39 +3.4
3,433,751 + SGL_RS17750 0.43 +2.4
3,433,759 - SGL_RS17750 0.44 +3.2
3,433,824 - SGL_RS17750 0.51 +3.0
3,434,447 - SGL_RS17755 0.19 +0.6
3,434,525 - SGL_RS17755 0.43 +1.0
3,434,661 - SGL_RS17755 0.86 +1.8
3,434,997 + +3.7
3,435,002 + +3.2
3,435,010 - +3.5
3,435,270 + SGL_RS17760 0.25 +3.4
3,435,306 + SGL_RS17760 0.28 +3.3
3,435,387 + SGL_RS17760 0.33 +3.4
3,435,395 - SGL_RS17760 0.33 +3.3
3,435,397 + SGL_RS17760 0.33 +3.1
3,435,558 + SGL_RS17760 0.44 +3.3
3,435,641 + SGL_RS17760 0.49 +2.8
3,435,641 + SGL_RS17760 0.49 +3.2
3,435,641 + SGL_RS17760 0.49 +2.3
3,435,649 - SGL_RS17760 0.50 +3.3
3,435,649 - SGL_RS17760 0.50 +3.0

Or see this region's nucleotide sequence