Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17105 and SGL_RS17110 are separated by 87 nucleotides SGL_RS17110 and SGL_RS17115 are separated by 193 nucleotides SGL_RS17115 and SGL_RS17120 overlap by 8 nucleotides
SGL_RS17105: SGL_RS17105 - tRNA-Leu, at 3,292,004 to 3,292,089
_RS17105
SGL_RS17110: SGL_RS17110 - hypothetical protein, at 3,292,177 to 3,292,884
_RS17110
SGL_RS17115: SGL_RS17115 - DUF3370 domain-containing protein, at 3,293,078 to 3,294,505
_RS17115
SGL_RS17120: SGL_RS17120 - response regulator transcription factor, at 3,294,498 to 3,295,250
_RS17120
Position (kb)
3293
3294
3295 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3292.278 kb on - strand, within SGL_RS17110 at 3292.325 kb on - strand, within SGL_RS17110 at 3292.387 kb on + strand, within SGL_RS17110 at 3292.587 kb on + strand, within SGL_RS17110 at 3292.595 kb on - strand, within SGL_RS17110 at 3292.596 kb on + strand, within SGL_RS17110 at 3292.616 kb on + strand, within SGL_RS17110 at 3292.789 kb on + strand, within SGL_RS17110 at 3292.970 kb on - strand at 3293.223 kb on + strand, within SGL_RS17115 at 3293.231 kb on - strand, within SGL_RS17115 at 3293.360 kb on - strand, within SGL_RS17115 at 3293.370 kb on + strand, within SGL_RS17115 at 3293.483 kb on - strand, within SGL_RS17115 at 3293.742 kb on - strand, within SGL_RS17115 at 3294.017 kb on + strand, within SGL_RS17115 at 3294.291 kb on - strand, within SGL_RS17115 at 3294.296 kb on - strand, within SGL_RS17115 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.607 kb on + strand, within SGL_RS17120 at 3294.611 kb on + strand, within SGL_RS17120 at 3294.703 kb on + strand, within SGL_RS17120 at 3294.706 kb on - strand, within SGL_RS17120 at 3294.717 kb on + strand, within SGL_RS17120 at 3294.764 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.967 kb on + strand, within SGL_RS17120 at 3294.987 kb on + strand, within SGL_RS17120 at 3295.058 kb on + strand, within SGL_RS17120 at 3295.155 kb on + strand, within SGL_RS17120 at 3295.176 kb on + strand at 3295.184 kb on - strand at 3295.199 kb on - strand at 3295.247 kb on - strand at 3295.502 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 3,292,278 - SGL_RS17110 0.14 -1.6 3,292,325 - SGL_RS17110 0.21 -3.5 3,292,387 + SGL_RS17110 0.30 -2.1 3,292,587 + SGL_RS17110 0.58 -3.3 3,292,595 - SGL_RS17110 0.59 -0.8 3,292,596 + SGL_RS17110 0.59 -2.7 3,292,616 + SGL_RS17110 0.62 -3.7 3,292,789 + SGL_RS17110 0.86 -4.5 3,292,970 - +1.5 3,293,223 + SGL_RS17115 0.10 -4.1 3,293,231 - SGL_RS17115 0.11 -3.3 3,293,360 - SGL_RS17115 0.20 -3.9 3,293,370 + SGL_RS17115 0.20 -4.8 3,293,483 - SGL_RS17115 0.28 -3.0 3,293,742 - SGL_RS17115 0.46 -3.3 3,294,017 + SGL_RS17115 0.66 -3.8 3,294,291 - SGL_RS17115 0.85 -0.3 3,294,296 - SGL_RS17115 0.85 -5.3 3,294,607 + SGL_RS17120 0.14 +0.6 3,294,607 + SGL_RS17120 0.14 -0.4 3,294,607 + SGL_RS17120 0.14 -0.7 3,294,611 + SGL_RS17120 0.15 -0.3 3,294,703 + SGL_RS17120 0.27 +1.0 3,294,706 - SGL_RS17120 0.28 +0.4 3,294,717 + SGL_RS17120 0.29 +1.3 3,294,764 + SGL_RS17120 0.35 +0.2 3,294,967 + SGL_RS17120 0.62 +0.6 3,294,967 + SGL_RS17120 0.62 -0.0 3,294,987 + SGL_RS17120 0.65 -0.1 3,295,058 + SGL_RS17120 0.74 +0.2 3,295,155 + SGL_RS17120 0.87 -0.5 3,295,176 + +0.0 3,295,184 - -0.2 3,295,199 - +0.5 3,295,247 - -0.2 3,295,502 + -1.2
Or see this region's nucleotide sequence