Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16960

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16955 and SGL_RS16960 are separated by 129 nucleotidesSGL_RS16960 and SGL_RS16965 are separated by 1 nucleotidesSGL_RS16965 and SGL_RS16970 are separated by 11 nucleotidesSGL_RS16970 and SGL_RS16975 are separated by 69 nucleotides SGL_RS16955: SGL_RS16955 - site-2 protease family protein, at 3,260,137 to 3,261,276 _RS16955 SGL_RS16960: SGL_RS16960 - YggS family pyridoxal phosphate-dependent enzyme, at 3,261,406 to 3,262,062 _RS16960 SGL_RS16965: SGL_RS16965 - type II toxin-antitoxin system VapC family toxin, at 3,262,064 to 3,262,459 _RS16965 SGL_RS16970: SGL_RS16970 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 3,262,471 to 3,262,749 _RS16970 SGL_RS16975: SGL_RS16975 - FIST C-terminal domain-containing protein, at 3,262,819 to 3,264,162 _RS16975 Position (kb) 3261 3262 3263Strain fitness (log2 ratio) -1 0 1 2at 3260.487 kb on + strand, within SGL_RS16955at 3260.623 kb on - strand, within SGL_RS16955at 3260.747 kb on - strand, within SGL_RS16955at 3260.754 kb on + strand, within SGL_RS16955at 3260.772 kb on - strand, within SGL_RS16955at 3260.794 kb on - strand, within SGL_RS16955at 3261.021 kb on + strand, within SGL_RS16955at 3261.029 kb on - strand, within SGL_RS16955at 3261.150 kb on - strand, within SGL_RS16955at 3261.255 kb on + strandat 3261.334 kb on - strandat 3261.442 kb on + strandat 3261.445 kb on + strandat 3261.455 kb on + strandat 3261.463 kb on - strandat 3261.495 kb on - strand, within SGL_RS16960at 3261.554 kb on - strand, within SGL_RS16960at 3261.632 kb on - strand, within SGL_RS16960at 3261.632 kb on - strand, within SGL_RS16960at 3261.876 kb on - strand, within SGL_RS16960at 3261.879 kb on + strand, within SGL_RS16960at 3261.977 kb on - strand, within SGL_RS16960at 3261.977 kb on - strand, within SGL_RS16960at 3262.140 kb on + strand, within SGL_RS16965at 3262.654 kb on + strand, within SGL_RS16970at 3262.827 kb on + strandat 3262.909 kb on - strandat 3262.988 kb on - strand, within SGL_RS16975

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
remove
3,260,487 + SGL_RS16955 0.31 +1.5
3,260,623 - SGL_RS16955 0.43 +0.4
3,260,747 - SGL_RS16955 0.54 -0.1
3,260,754 + SGL_RS16955 0.54 -0.6
3,260,772 - SGL_RS16955 0.56 -0.4
3,260,794 - SGL_RS16955 0.58 -0.1
3,261,021 + SGL_RS16955 0.78 +0.7
3,261,029 - SGL_RS16955 0.78 +0.3
3,261,150 - SGL_RS16955 0.89 -0.6
3,261,255 + +0.6
3,261,334 - -0.4
3,261,442 + +1.6
3,261,445 + +1.2
3,261,455 + +1.9
3,261,463 - +1.3
3,261,495 - SGL_RS16960 0.14 +1.7
3,261,554 - SGL_RS16960 0.23 +2.1
3,261,632 - SGL_RS16960 0.34 +0.5
3,261,632 - SGL_RS16960 0.34 +1.1
3,261,876 - SGL_RS16960 0.72 +1.0
3,261,879 + SGL_RS16960 0.72 +0.7
3,261,977 - SGL_RS16960 0.87 +1.1
3,261,977 - SGL_RS16960 0.87 +1.0
3,262,140 + SGL_RS16965 0.19 -0.4
3,262,654 + SGL_RS16970 0.66 -0.6
3,262,827 + -0.6
3,262,909 - -0.9
3,262,988 - SGL_RS16975 0.13 -0.7

Or see this region's nucleotide sequence