Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16750

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16745 and SGL_RS16750 are separated by 301 nucleotidesSGL_RS16750 and SGL_RS16755 are separated by 23 nucleotidesSGL_RS16755 and SGL_RS16760 are separated by 26 nucleotides SGL_RS16745: SGL_RS16745 - CHAT domain-containing protein, at 3,214,581 to 3,217,553 _RS16745 SGL_RS16750: SGL_RS16750 - ABC transporter ATP-binding protein, at 3,217,855 to 3,218,655 _RS16750 SGL_RS16755: SGL_RS16755 - TM2 domain-containing protein, at 3,218,679 to 3,219,131 _RS16755 SGL_RS16760: SGL_RS16760 - DUF3598 family protein, at 3,219,158 to 3,219,979 _RS16760 Position (kb) 3217 3218 3219Strain fitness (log2 ratio) -1 0 1 2at 3217.207 kb on + strand, within SGL_RS16745at 3217.333 kb on - strandat 3217.333 kb on - strandat 3217.333 kb on - strandat 3217.593 kb on + strandat 3217.641 kb on + strandat 3217.793 kb on - strandat 3217.839 kb on + strandat 3217.941 kb on - strand, within SGL_RS16750at 3217.972 kb on + strand, within SGL_RS16750at 3217.973 kb on + strand, within SGL_RS16750at 3217.989 kb on + strand, within SGL_RS16750at 3218.099 kb on + strand, within SGL_RS16750at 3218.099 kb on + strand, within SGL_RS16750at 3218.107 kb on - strand, within SGL_RS16750at 3218.134 kb on + strand, within SGL_RS16750at 3218.240 kb on - strand, within SGL_RS16750at 3218.310 kb on + strand, within SGL_RS16750at 3218.402 kb on - strand, within SGL_RS16750at 3218.467 kb on - strand, within SGL_RS16750at 3218.470 kb on - strand, within SGL_RS16750at 3218.624 kb on - strandat 3218.634 kb on - strandat 3218.704 kb on - strandat 3218.903 kb on + strand, within SGL_RS16755at 3219.166 kb on - strandat 3219.255 kb on - strand, within SGL_RS16760at 3219.425 kb on - strand, within SGL_RS16760at 3219.468 kb on - strand, within SGL_RS16760at 3219.476 kb on - strand, within SGL_RS16760at 3219.504 kb on + strand, within SGL_RS16760at 3219.504 kb on + strand, within SGL_RS16760at 3219.512 kb on - strand, within SGL_RS16760at 3219.512 kb on - strand, within SGL_RS16760at 3219.512 kb on - strand, within SGL_RS16760at 3219.538 kb on + strand, within SGL_RS16760at 3219.612 kb on - strand, within SGL_RS16760at 3219.640 kb on - strand, within SGL_RS16760

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,217,207 + SGL_RS16745 0.88 -0.5
3,217,333 - -1.3
3,217,333 - -0.1
3,217,333 - -0.3
3,217,593 + -0.1
3,217,641 + +0.6
3,217,793 - +0.7
3,217,839 + +0.3
3,217,941 - SGL_RS16750 0.11 -0.0
3,217,972 + SGL_RS16750 0.15 +2.1
3,217,973 + SGL_RS16750 0.15 +1.7
3,217,989 + SGL_RS16750 0.17 +1.5
3,218,099 + SGL_RS16750 0.30 +1.1
3,218,099 + SGL_RS16750 0.30 +1.6
3,218,107 - SGL_RS16750 0.31 +1.8
3,218,134 + SGL_RS16750 0.35 +1.9
3,218,240 - SGL_RS16750 0.48 +1.4
3,218,310 + SGL_RS16750 0.57 +1.7
3,218,402 - SGL_RS16750 0.68 +2.3
3,218,467 - SGL_RS16750 0.76 +1.1
3,218,470 - SGL_RS16750 0.77 +0.9
3,218,624 - +0.5
3,218,634 - -0.4
3,218,704 - -0.6
3,218,903 + SGL_RS16755 0.49 -0.4
3,219,166 - +0.1
3,219,255 - SGL_RS16760 0.12 -0.3
3,219,425 - SGL_RS16760 0.32 -0.6
3,219,468 - SGL_RS16760 0.38 -0.5
3,219,476 - SGL_RS16760 0.39 -0.2
3,219,504 + SGL_RS16760 0.42 +0.0
3,219,504 + SGL_RS16760 0.42 +0.1
3,219,512 - SGL_RS16760 0.43 +0.6
3,219,512 - SGL_RS16760 0.43 -0.8
3,219,512 - SGL_RS16760 0.43 +0.1
3,219,538 + SGL_RS16760 0.46 +0.5
3,219,612 - SGL_RS16760 0.55 +1.0
3,219,640 - SGL_RS16760 0.59 -0.5

Or see this region's nucleotide sequence