Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16745 and SGL_RS16750 are separated by 301 nucleotides SGL_RS16750 and SGL_RS16755 are separated by 23 nucleotides SGL_RS16755 and SGL_RS16760 are separated by 26 nucleotides
SGL_RS16745: SGL_RS16745 - CHAT domain-containing protein, at 3,214,581 to 3,217,553
_RS16745
SGL_RS16750: SGL_RS16750 - ABC transporter ATP-binding protein, at 3,217,855 to 3,218,655
_RS16750
SGL_RS16755: SGL_RS16755 - TM2 domain-containing protein, at 3,218,679 to 3,219,131
_RS16755
SGL_RS16760: SGL_RS16760 - DUF3598 family protein, at 3,219,158 to 3,219,979
_RS16760
Position (kb)
3217
3218
3219 Strain fitness (log2 ratio)
-1
0
1
2 at 3217.207 kb on + strand, within SGL_RS16745 at 3217.333 kb on - strand at 3217.333 kb on - strand at 3217.333 kb on - strand at 3217.593 kb on + strand at 3217.641 kb on + strand at 3217.793 kb on - strand at 3217.839 kb on + strand at 3217.941 kb on - strand, within SGL_RS16750 at 3217.972 kb on + strand, within SGL_RS16750 at 3217.973 kb on + strand, within SGL_RS16750 at 3217.989 kb on + strand, within SGL_RS16750 at 3218.099 kb on + strand, within SGL_RS16750 at 3218.099 kb on + strand, within SGL_RS16750 at 3218.107 kb on - strand, within SGL_RS16750 at 3218.134 kb on + strand, within SGL_RS16750 at 3218.240 kb on - strand, within SGL_RS16750 at 3218.310 kb on + strand, within SGL_RS16750 at 3218.402 kb on - strand, within SGL_RS16750 at 3218.467 kb on - strand, within SGL_RS16750 at 3218.470 kb on - strand, within SGL_RS16750 at 3218.624 kb on - strand at 3218.634 kb on - strand at 3218.704 kb on - strand at 3218.903 kb on + strand, within SGL_RS16755 at 3219.166 kb on - strand at 3219.255 kb on - strand, within SGL_RS16760 at 3219.425 kb on - strand, within SGL_RS16760 at 3219.468 kb on - strand, within SGL_RS16760 at 3219.476 kb on - strand, within SGL_RS16760 at 3219.504 kb on + strand, within SGL_RS16760 at 3219.504 kb on + strand, within SGL_RS16760 at 3219.512 kb on - strand, within SGL_RS16760 at 3219.512 kb on - strand, within SGL_RS16760 at 3219.512 kb on - strand, within SGL_RS16760 at 3219.538 kb on + strand, within SGL_RS16760 at 3219.612 kb on - strand, within SGL_RS16760 at 3219.640 kb on - strand, within SGL_RS16760
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 3,217,207 + SGL_RS16745 0.88 -0.5 3,217,333 - -1.3 3,217,333 - -0.1 3,217,333 - -0.3 3,217,593 + -0.1 3,217,641 + +0.6 3,217,793 - +0.7 3,217,839 + +0.3 3,217,941 - SGL_RS16750 0.11 -0.0 3,217,972 + SGL_RS16750 0.15 +2.1 3,217,973 + SGL_RS16750 0.15 +1.7 3,217,989 + SGL_RS16750 0.17 +1.5 3,218,099 + SGL_RS16750 0.30 +1.1 3,218,099 + SGL_RS16750 0.30 +1.6 3,218,107 - SGL_RS16750 0.31 +1.8 3,218,134 + SGL_RS16750 0.35 +1.9 3,218,240 - SGL_RS16750 0.48 +1.4 3,218,310 + SGL_RS16750 0.57 +1.7 3,218,402 - SGL_RS16750 0.68 +2.3 3,218,467 - SGL_RS16750 0.76 +1.1 3,218,470 - SGL_RS16750 0.77 +0.9 3,218,624 - +0.5 3,218,634 - -0.4 3,218,704 - -0.6 3,218,903 + SGL_RS16755 0.49 -0.4 3,219,166 - +0.1 3,219,255 - SGL_RS16760 0.12 -0.3 3,219,425 - SGL_RS16760 0.32 -0.6 3,219,468 - SGL_RS16760 0.38 -0.5 3,219,476 - SGL_RS16760 0.39 -0.2 3,219,504 + SGL_RS16760 0.42 +0.0 3,219,504 + SGL_RS16760 0.42 +0.1 3,219,512 - SGL_RS16760 0.43 +0.6 3,219,512 - SGL_RS16760 0.43 -0.8 3,219,512 - SGL_RS16760 0.43 +0.1 3,219,538 + SGL_RS16760 0.46 +0.5 3,219,612 - SGL_RS16760 0.55 +1.0 3,219,640 - SGL_RS16760 0.59 -0.5
Or see this region's nucleotide sequence