Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16600

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16595 and SGL_RS20175 are separated by 66 nucleotidesSGL_RS20175 and SGL_RS16600 are separated by 46 nucleotidesSGL_RS16600 and SGL_RS16605 are separated by 293 nucleotidesSGL_RS16605 and SGL_RS16610 are separated by 301 nucleotides SGL_RS16595: SGL_RS16595 - NAD(P)H-quinone oxidoreductase subunit F, at 3,178,231 to 3,180,135 _RS16595 SGL_RS20175: SGL_RS20175 - hypothetical protein, at 3,180,202 to 3,180,333 _RS20175 SGL_RS16600: SGL_RS16600 - hypothetical protein, at 3,180,380 to 3,181,414 _RS16600 SGL_RS16605: SGL_RS16605 - RNA-binding protein, at 3,181,708 to 3,182,013 _RS16605 SGL_RS16610: SGL_RS16610 - magnesium protoporphyrin IX methyltransferase, at 3,182,315 to 3,183,007 _RS16610 Position (kb) 3180 3181 3182Strain fitness (log2 ratio) -1 0 1at 3179.389 kb on + strand, within SGL_RS16595at 3179.556 kb on - strand, within SGL_RS16595at 3179.564 kb on - strand, within SGL_RS16595at 3179.621 kb on + strand, within SGL_RS16595at 3179.624 kb on + strand, within SGL_RS16595at 3179.666 kb on - strand, within SGL_RS16595at 3179.694 kb on + strand, within SGL_RS16595at 3179.788 kb on + strand, within SGL_RS16595at 3179.796 kb on - strand, within SGL_RS16595at 3179.796 kb on - strand, within SGL_RS16595at 3179.810 kb on - strand, within SGL_RS16595at 3179.904 kb on - strand, within SGL_RS16595at 3180.024 kb on + strandat 3180.066 kb on + strandat 3180.290 kb on - strand, within SGL_RS20175at 3180.411 kb on + strandat 3180.519 kb on - strand, within SGL_RS16600at 3180.662 kb on - strand, within SGL_RS16600at 3181.574 kb on + strandat 3181.825 kb on + strand, within SGL_RS16605at 3181.988 kb on - strandat 3182.121 kb on + strandat 3182.123 kb on + strandat 3182.156 kb on + strandat 3182.177 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,179,389 + SGL_RS16595 0.61 +0.6
3,179,556 - SGL_RS16595 0.70 +0.4
3,179,564 - SGL_RS16595 0.70 +1.0
3,179,621 + SGL_RS16595 0.73 +1.5
3,179,624 + SGL_RS16595 0.73 -0.1
3,179,666 - SGL_RS16595 0.75 -0.6
3,179,694 + SGL_RS16595 0.77 +0.2
3,179,788 + SGL_RS16595 0.82 +0.2
3,179,796 - SGL_RS16595 0.82 -0.6
3,179,796 - SGL_RS16595 0.82 +0.5
3,179,810 - SGL_RS16595 0.83 -0.3
3,179,904 - SGL_RS16595 0.88 +0.0
3,180,024 + +0.3
3,180,066 + +0.6
3,180,290 - SGL_RS20175 0.67 +0.3
3,180,411 + -1.3
3,180,519 - SGL_RS16600 0.13 +1.6
3,180,662 - SGL_RS16600 0.27 +0.8
3,181,574 + -0.5
3,181,825 + SGL_RS16605 0.38 -0.4
3,181,988 - -0.3
3,182,121 + +0.4
3,182,123 + -0.1
3,182,156 + -1.2
3,182,177 + +0.8

Or see this region's nucleotide sequence