Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16320 and SGL_RS16325 are separated by 165 nucleotides SGL_RS16325 and SGL_RS16330 are separated by 128 nucleotides
SGL_RS16320: SGL_RS16320 - hypothetical protein, at 3,110,910 to 3,111,830
_RS16320
SGL_RS16325: SGL_RS16325 - RidA family protein, at 3,111,996 to 3,112,388
_RS16325
SGL_RS16330: SGL_RS16330 - NADP-specific glutamate dehydrogenase, at 3,112,517 to 3,113,803
_RS16330
Position (kb)
3111
3112
3113 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3111.321 kb on - strand, within SGL_RS16320 at 3112.028 kb on - strand at 3112.045 kb on + strand, within SGL_RS16325 at 3112.128 kb on + strand, within SGL_RS16325 at 3112.184 kb on + strand, within SGL_RS16325 at 3112.192 kb on - strand, within SGL_RS16325 at 3112.318 kb on - strand, within SGL_RS16325 at 3112.326 kb on - strand, within SGL_RS16325 at 3112.376 kb on + strand at 3112.382 kb on - strand at 3112.395 kb on + strand at 3112.482 kb on - strand at 3112.697 kb on + strand, within SGL_RS16330 at 3112.701 kb on + strand, within SGL_RS16330 at 3112.715 kb on + strand, within SGL_RS16330 at 3112.723 kb on - strand, within SGL_RS16330 at 3112.723 kb on - strand, within SGL_RS16330 at 3112.760 kb on + strand, within SGL_RS16330 at 3112.768 kb on - strand, within SGL_RS16330 at 3112.786 kb on + strand, within SGL_RS16330 at 3112.794 kb on - strand, within SGL_RS16330 at 3112.853 kb on + strand, within SGL_RS16330 at 3112.888 kb on + strand, within SGL_RS16330 at 3112.949 kb on - strand, within SGL_RS16330 at 3112.956 kb on + strand, within SGL_RS16330 at 3112.985 kb on + strand, within SGL_RS16330 at 3113.021 kb on + strand, within SGL_RS16330 at 3113.077 kb on + strand, within SGL_RS16330 at 3113.102 kb on + strand, within SGL_RS16330 at 3113.124 kb on - strand, within SGL_RS16330 at 3113.156 kb on + strand, within SGL_RS16330 at 3113.318 kb on + strand, within SGL_RS16330 at 3113.318 kb on + strand, within SGL_RS16330
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 3,111,321 - SGL_RS16320 0.45 -0.7 3,112,028 - +3.3 3,112,045 + SGL_RS16325 0.12 +3.0 3,112,128 + SGL_RS16325 0.34 +2.8 3,112,184 + SGL_RS16325 0.48 +2.8 3,112,192 - SGL_RS16325 0.50 +3.0 3,112,318 - SGL_RS16325 0.82 +3.2 3,112,326 - SGL_RS16325 0.84 +3.1 3,112,376 + -0.5 3,112,382 - +2.7 3,112,395 + -0.7 3,112,482 - +0.8 3,112,697 + SGL_RS16330 0.14 +0.2 3,112,701 + SGL_RS16330 0.14 -0.3 3,112,715 + SGL_RS16330 0.15 +0.1 3,112,723 - SGL_RS16330 0.16 +1.1 3,112,723 - SGL_RS16330 0.16 +0.6 3,112,760 + SGL_RS16330 0.19 -0.4 3,112,768 - SGL_RS16330 0.20 +0.6 3,112,786 + SGL_RS16330 0.21 -0.1 3,112,794 - SGL_RS16330 0.22 +0.0 3,112,853 + SGL_RS16330 0.26 +0.3 3,112,888 + SGL_RS16330 0.29 -0.5 3,112,949 - SGL_RS16330 0.34 -0.4 3,112,956 + SGL_RS16330 0.34 -0.2 3,112,985 + SGL_RS16330 0.36 -1.0 3,113,021 + SGL_RS16330 0.39 +0.1 3,113,077 + SGL_RS16330 0.44 -0.1 3,113,102 + SGL_RS16330 0.45 -0.8 3,113,124 - SGL_RS16330 0.47 -0.9 3,113,156 + SGL_RS16330 0.50 +0.0 3,113,318 + SGL_RS16330 0.62 +0.1 3,113,318 + SGL_RS16330 0.62 -0.2
Or see this region's nucleotide sequence