Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16205 and SGL_RS16210 overlap by 17 nucleotides SGL_RS16210 and SGL_RS16215 are separated by 209 nucleotides SGL_RS16215 and SGL_RS16220 are separated by 140 nucleotides
SGL_RS16205: SGL_RS16205 - hydantoinase B/oxoprolinase family protein, at 3,084,677 to 3,088,435
_RS16205
SGL_RS16210: SGL_RS16210 - CYTH domain-containing protein, at 3,088,419 to 3,088,883
_RS16210
SGL_RS16215: SGL_RS16215 - hypothetical protein, at 3,089,093 to 3,089,515
_RS16215
SGL_RS16220: SGL_RS16220 - APC family permease, at 3,089,656 to 3,091,014
_RS16220
Position (kb)
3088
3089 Strain fitness (log2 ratio)
-1
0
1 at 3087.472 kb on - strand, within SGL_RS16205 at 3087.545 kb on + strand, within SGL_RS16205 at 3087.609 kb on - strand, within SGL_RS16205 at 3087.626 kb on + strand, within SGL_RS16205 at 3087.634 kb on - strand, within SGL_RS16205 at 3087.674 kb on + strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.879 kb on + strand, within SGL_RS16205 at 3087.928 kb on + strand, within SGL_RS16205 at 3087.938 kb on + strand, within SGL_RS16205 at 3088.075 kb on - strand at 3088.192 kb on + strand at 3088.291 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.517 kb on + strand, within SGL_RS16210 at 3088.588 kb on + strand, within SGL_RS16210 at 3088.595 kb on - strand, within SGL_RS16210 at 3088.826 kb on - strand, within SGL_RS16210 at 3089.662 kb on + strand at 3089.662 kb on + strand at 3089.766 kb on + strand at 3089.776 kb on + strand at 3089.800 kb on - strand, within SGL_RS16220 at 3089.852 kb on + strand, within SGL_RS16220
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 3,087,472 - SGL_RS16205 0.74 +0.3 3,087,545 + SGL_RS16205 0.76 -0.7 3,087,609 - SGL_RS16205 0.78 +1.1 3,087,626 + SGL_RS16205 0.78 +0.3 3,087,634 - SGL_RS16205 0.79 +0.0 3,087,674 + SGL_RS16205 0.80 +0.2 3,087,682 - SGL_RS16205 0.80 -0.3 3,087,682 - SGL_RS16205 0.80 +0.9 3,087,682 - SGL_RS16205 0.80 +0.1 3,087,879 + SGL_RS16205 0.85 +1.2 3,087,928 + SGL_RS16205 0.86 -0.0 3,087,938 + SGL_RS16205 0.87 -0.2 3,088,075 - -0.2 3,088,192 + -0.3 3,088,291 + +0.2 3,088,415 + +0.4 3,088,415 + -0.1 3,088,415 + +1.0 3,088,415 + -0.0 3,088,517 + SGL_RS16210 0.21 +1.6 3,088,588 + SGL_RS16210 0.36 +1.3 3,088,595 - SGL_RS16210 0.38 +1.5 3,088,826 - SGL_RS16210 0.88 -0.5 3,089,662 + -0.5 3,089,662 + -0.4 3,089,766 + +0.1 3,089,776 + +0.4 3,089,800 - SGL_RS16220 0.11 -0.2 3,089,852 + SGL_RS16220 0.14 +0.5
Or see this region's nucleotide sequence