Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16210

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16205 and SGL_RS16210 overlap by 17 nucleotidesSGL_RS16210 and SGL_RS16215 are separated by 209 nucleotidesSGL_RS16215 and SGL_RS16220 are separated by 140 nucleotides SGL_RS16205: SGL_RS16205 - hydantoinase B/oxoprolinase family protein, at 3,084,677 to 3,088,435 _RS16205 SGL_RS16210: SGL_RS16210 - CYTH domain-containing protein, at 3,088,419 to 3,088,883 _RS16210 SGL_RS16215: SGL_RS16215 - hypothetical protein, at 3,089,093 to 3,089,515 _RS16215 SGL_RS16220: SGL_RS16220 - APC family permease, at 3,089,656 to 3,091,014 _RS16220 Position (kb) 3088 3089Strain fitness (log2 ratio) -1 0 1at 3087.472 kb on - strand, within SGL_RS16205at 3087.545 kb on + strand, within SGL_RS16205at 3087.609 kb on - strand, within SGL_RS16205at 3087.626 kb on + strand, within SGL_RS16205at 3087.634 kb on - strand, within SGL_RS16205at 3087.674 kb on + strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.682 kb on - strand, within SGL_RS16205at 3087.879 kb on + strand, within SGL_RS16205at 3087.928 kb on + strand, within SGL_RS16205at 3087.938 kb on + strand, within SGL_RS16205at 3088.075 kb on - strandat 3088.192 kb on + strandat 3088.291 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.415 kb on + strandat 3088.517 kb on + strand, within SGL_RS16210at 3088.588 kb on + strand, within SGL_RS16210at 3088.595 kb on - strand, within SGL_RS16210at 3088.826 kb on - strand, within SGL_RS16210at 3089.662 kb on + strandat 3089.662 kb on + strandat 3089.766 kb on + strandat 3089.776 kb on + strandat 3089.800 kb on - strand, within SGL_RS16220at 3089.852 kb on + strand, within SGL_RS16220

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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3,087,472 - SGL_RS16205 0.74 +0.3
3,087,545 + SGL_RS16205 0.76 -0.7
3,087,609 - SGL_RS16205 0.78 +1.1
3,087,626 + SGL_RS16205 0.78 +0.3
3,087,634 - SGL_RS16205 0.79 +0.0
3,087,674 + SGL_RS16205 0.80 +0.2
3,087,682 - SGL_RS16205 0.80 -0.3
3,087,682 - SGL_RS16205 0.80 +0.9
3,087,682 - SGL_RS16205 0.80 +0.1
3,087,879 + SGL_RS16205 0.85 +1.2
3,087,928 + SGL_RS16205 0.86 -0.0
3,087,938 + SGL_RS16205 0.87 -0.2
3,088,075 - -0.2
3,088,192 + -0.3
3,088,291 + +0.2
3,088,415 + +0.4
3,088,415 + -0.1
3,088,415 + +1.0
3,088,415 + -0.0
3,088,517 + SGL_RS16210 0.21 +1.6
3,088,588 + SGL_RS16210 0.36 +1.3
3,088,595 - SGL_RS16210 0.38 +1.5
3,088,826 - SGL_RS16210 0.88 -0.5
3,089,662 + -0.5
3,089,662 + -0.4
3,089,766 + +0.1
3,089,776 + +0.4
3,089,800 - SGL_RS16220 0.11 -0.2
3,089,852 + SGL_RS16220 0.14 +0.5

Or see this region's nucleotide sequence