Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15320

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15315 and SGL_RS15320 are separated by 130 nucleotidesSGL_RS15320 and SGL_RS15325 are separated by 142 nucleotides SGL_RS15315: SGL_RS15315 - 30S ribosomal protein S12 methylthiotransferase RimO, at 2,886,182 to 2,887,513 _RS15315 SGL_RS15320: SGL_RS15320 - DEAD/DEAH box helicase, at 2,887,644 to 2,889,122 _RS15320 SGL_RS15325: SGL_RS15325 - N-acetyl-gamma-glutamyl-phosphate reductase, at 2,889,265 to 2,890,320 _RS15325 Position (kb) 2887 2888 2889 2890Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2886.747 kb on + strand, within SGL_RS15315at 2886.827 kb on + strand, within SGL_RS15315at 2886.874 kb on - strand, within SGL_RS15315at 2886.880 kb on - strand, within SGL_RS15315at 2887.072 kb on - strand, within SGL_RS15315at 2887.218 kb on - strand, within SGL_RS15315at 2887.312 kb on + strand, within SGL_RS15315at 2887.320 kb on - strand, within SGL_RS15315at 2887.419 kb on + strandat 2887.506 kb on - strandat 2887.791 kb on - strandat 2887.982 kb on - strand, within SGL_RS15320at 2888.002 kb on + strand, within SGL_RS15320at 2888.010 kb on - strand, within SGL_RS15320at 2888.035 kb on + strand, within SGL_RS15320at 2888.035 kb on + strand, within SGL_RS15320at 2888.136 kb on - strand, within SGL_RS15320at 2888.266 kb on + strand, within SGL_RS15320at 2888.276 kb on + strand, within SGL_RS15320at 2888.599 kb on + strand, within SGL_RS15320at 2888.682 kb on + strand, within SGL_RS15320at 2888.706 kb on + strand, within SGL_RS15320at 2888.831 kb on - strand, within SGL_RS15320at 2888.897 kb on - strand, within SGL_RS15320at 2889.062 kb on + strandat 2889.203 kb on - strandat 2889.389 kb on - strand, within SGL_RS15325at 2889.616 kb on + strand, within SGL_RS15325at 2890.085 kb on + strand, within SGL_RS15325at 2890.119 kb on - strand, within SGL_RS15325

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,886,747 + SGL_RS15315 0.42 -2.1
2,886,827 + SGL_RS15315 0.48 -4.2
2,886,874 - SGL_RS15315 0.52 -4.0
2,886,880 - SGL_RS15315 0.52 -3.6
2,887,072 - SGL_RS15315 0.67 -3.7
2,887,218 - SGL_RS15315 0.78 -3.1
2,887,312 + SGL_RS15315 0.85 -3.2
2,887,320 - SGL_RS15315 0.85 -2.4
2,887,419 + -3.8
2,887,506 - -2.7
2,887,791 - -4.6
2,887,982 - SGL_RS15320 0.23 -6.0
2,888,002 + SGL_RS15320 0.24 -3.9
2,888,010 - SGL_RS15320 0.25 -2.2
2,888,035 + SGL_RS15320 0.26 -3.6
2,888,035 + SGL_RS15320 0.26 -3.3
2,888,136 - SGL_RS15320 0.33 -2.3
2,888,266 + SGL_RS15320 0.42 -2.7
2,888,276 + SGL_RS15320 0.43 -3.2
2,888,599 + SGL_RS15320 0.65 -2.3
2,888,682 + SGL_RS15320 0.70 -5.2
2,888,706 + SGL_RS15320 0.72 -1.2
2,888,831 - SGL_RS15320 0.80 +0.8
2,888,897 - SGL_RS15320 0.85 -4.4
2,889,062 + -3.9
2,889,203 - +0.6
2,889,389 - SGL_RS15325 0.12 -1.5
2,889,616 + SGL_RS15325 0.33 -0.9
2,890,085 + SGL_RS15325 0.78 -1.2
2,890,119 - SGL_RS15325 0.81 -1.2

Or see this region's nucleotide sequence