Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15310 and SGL_RS15315 are separated by 371 nucleotides SGL_RS15315 and SGL_RS15320 are separated by 130 nucleotides
SGL_RS15310: SGL_RS15310 - response regulator transcription factor, at 2,885,022 to 2,885,810
_RS15310
SGL_RS15315: SGL_RS15315 - 30S ribosomal protein S12 methylthiotransferase RimO, at 2,886,182 to 2,887,513
_RS15315
SGL_RS15320: SGL_RS15320 - DEAD/DEAH box helicase, at 2,887,644 to 2,889,122
_RS15320
Position (kb)
2886
2887
2888 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 2885.226 kb on - strand, within SGL_RS15310 at 2885.261 kb on - strand, within SGL_RS15310 at 2885.263 kb on + strand, within SGL_RS15310 at 2885.263 kb on + strand, within SGL_RS15310 at 2885.268 kb on + strand, within SGL_RS15310 at 2885.270 kb on + strand, within SGL_RS15310 at 2885.285 kb on - strand, within SGL_RS15310 at 2885.378 kb on - strand, within SGL_RS15310 at 2885.428 kb on + strand, within SGL_RS15310 at 2885.431 kb on - strand, within SGL_RS15310 at 2885.435 kb on + strand, within SGL_RS15310 at 2885.445 kb on - strand, within SGL_RS15310 at 2885.575 kb on + strand, within SGL_RS15310 at 2885.787 kb on - strand at 2885.833 kb on + strand at 2885.949 kb on - strand at 2885.993 kb on - strand at 2886.000 kb on + strand at 2886.256 kb on + strand at 2886.328 kb on - strand, within SGL_RS15315 at 2886.361 kb on + strand, within SGL_RS15315 at 2886.369 kb on + strand, within SGL_RS15315 at 2886.538 kb on + strand, within SGL_RS15315 at 2886.747 kb on + strand, within SGL_RS15315 at 2886.827 kb on + strand, within SGL_RS15315 at 2886.874 kb on - strand, within SGL_RS15315 at 2886.880 kb on - strand, within SGL_RS15315 at 2887.072 kb on - strand, within SGL_RS15315 at 2887.218 kb on - strand, within SGL_RS15315 at 2887.312 kb on + strand, within SGL_RS15315 at 2887.320 kb on - strand, within SGL_RS15315 at 2887.419 kb on + strand at 2887.506 kb on - strand at 2887.791 kb on - strand at 2887.982 kb on - strand, within SGL_RS15320 at 2888.002 kb on + strand, within SGL_RS15320 at 2888.010 kb on - strand, within SGL_RS15320 at 2888.035 kb on + strand, within SGL_RS15320 at 2888.035 kb on + strand, within SGL_RS15320 at 2888.136 kb on - strand, within SGL_RS15320 at 2888.266 kb on + strand, within SGL_RS15320 at 2888.276 kb on + strand, within SGL_RS15320
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 2,885,226 - SGL_RS15310 0.26 +1.9 2,885,261 - SGL_RS15310 0.30 +2.3 2,885,263 + SGL_RS15310 0.31 +2.4 2,885,263 + SGL_RS15310 0.31 +2.1 2,885,268 + SGL_RS15310 0.31 +2.2 2,885,270 + SGL_RS15310 0.31 +2.5 2,885,285 - SGL_RS15310 0.33 +2.0 2,885,378 - SGL_RS15310 0.45 +2.3 2,885,428 + SGL_RS15310 0.51 +2.3 2,885,431 - SGL_RS15310 0.52 +2.4 2,885,435 + SGL_RS15310 0.52 +2.2 2,885,445 - SGL_RS15310 0.54 +2.3 2,885,575 + SGL_RS15310 0.70 +1.9 2,885,787 - +2.1 2,885,833 + -1.1 2,885,949 - +0.2 2,885,993 - +0.4 2,886,000 + +0.3 2,886,256 + -3.9 2,886,328 - SGL_RS15315 0.11 -1.2 2,886,361 + SGL_RS15315 0.13 -3.5 2,886,369 + SGL_RS15315 0.14 -3.7 2,886,538 + SGL_RS15315 0.27 -3.3 2,886,747 + SGL_RS15315 0.42 -2.1 2,886,827 + SGL_RS15315 0.48 -4.2 2,886,874 - SGL_RS15315 0.52 -4.0 2,886,880 - SGL_RS15315 0.52 -3.6 2,887,072 - SGL_RS15315 0.67 -3.7 2,887,218 - SGL_RS15315 0.78 -3.1 2,887,312 + SGL_RS15315 0.85 -3.2 2,887,320 - SGL_RS15315 0.85 -2.4 2,887,419 + -3.8 2,887,506 - -2.7 2,887,791 - -4.6 2,887,982 - SGL_RS15320 0.23 -6.0 2,888,002 + SGL_RS15320 0.24 -3.9 2,888,010 - SGL_RS15320 0.25 -2.2 2,888,035 + SGL_RS15320 0.26 -3.6 2,888,035 + SGL_RS15320 0.26 -3.3 2,888,136 - SGL_RS15320 0.33 -2.3 2,888,266 + SGL_RS15320 0.42 -2.7 2,888,276 + SGL_RS15320 0.43 -3.2
Or see this region's nucleotide sequence