Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15315

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15310 and SGL_RS15315 are separated by 371 nucleotidesSGL_RS15315 and SGL_RS15320 are separated by 130 nucleotides SGL_RS15310: SGL_RS15310 - response regulator transcription factor, at 2,885,022 to 2,885,810 _RS15310 SGL_RS15315: SGL_RS15315 - 30S ribosomal protein S12 methylthiotransferase RimO, at 2,886,182 to 2,887,513 _RS15315 SGL_RS15320: SGL_RS15320 - DEAD/DEAH box helicase, at 2,887,644 to 2,889,122 _RS15320 Position (kb) 2886 2887 2888Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 2885.226 kb on - strand, within SGL_RS15310at 2885.261 kb on - strand, within SGL_RS15310at 2885.263 kb on + strand, within SGL_RS15310at 2885.263 kb on + strand, within SGL_RS15310at 2885.268 kb on + strand, within SGL_RS15310at 2885.270 kb on + strand, within SGL_RS15310at 2885.285 kb on - strand, within SGL_RS15310at 2885.378 kb on - strand, within SGL_RS15310at 2885.428 kb on + strand, within SGL_RS15310at 2885.431 kb on - strand, within SGL_RS15310at 2885.435 kb on + strand, within SGL_RS15310at 2885.445 kb on - strand, within SGL_RS15310at 2885.575 kb on + strand, within SGL_RS15310at 2885.787 kb on - strandat 2885.833 kb on + strandat 2885.949 kb on - strandat 2885.993 kb on - strandat 2886.000 kb on + strandat 2886.256 kb on + strandat 2886.328 kb on - strand, within SGL_RS15315at 2886.361 kb on + strand, within SGL_RS15315at 2886.369 kb on + strand, within SGL_RS15315at 2886.538 kb on + strand, within SGL_RS15315at 2886.747 kb on + strand, within SGL_RS15315at 2886.827 kb on + strand, within SGL_RS15315at 2886.874 kb on - strand, within SGL_RS15315at 2886.880 kb on - strand, within SGL_RS15315at 2887.072 kb on - strand, within SGL_RS15315at 2887.218 kb on - strand, within SGL_RS15315at 2887.312 kb on + strand, within SGL_RS15315at 2887.320 kb on - strand, within SGL_RS15315at 2887.419 kb on + strandat 2887.506 kb on - strandat 2887.791 kb on - strandat 2887.982 kb on - strand, within SGL_RS15320at 2888.002 kb on + strand, within SGL_RS15320at 2888.010 kb on - strand, within SGL_RS15320at 2888.035 kb on + strand, within SGL_RS15320at 2888.035 kb on + strand, within SGL_RS15320at 2888.136 kb on - strand, within SGL_RS15320at 2888.266 kb on + strand, within SGL_RS15320at 2888.276 kb on + strand, within SGL_RS15320

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,885,226 - SGL_RS15310 0.26 +1.9
2,885,261 - SGL_RS15310 0.30 +2.3
2,885,263 + SGL_RS15310 0.31 +2.4
2,885,263 + SGL_RS15310 0.31 +2.1
2,885,268 + SGL_RS15310 0.31 +2.2
2,885,270 + SGL_RS15310 0.31 +2.5
2,885,285 - SGL_RS15310 0.33 +2.0
2,885,378 - SGL_RS15310 0.45 +2.3
2,885,428 + SGL_RS15310 0.51 +2.3
2,885,431 - SGL_RS15310 0.52 +2.4
2,885,435 + SGL_RS15310 0.52 +2.2
2,885,445 - SGL_RS15310 0.54 +2.3
2,885,575 + SGL_RS15310 0.70 +1.9
2,885,787 - +2.1
2,885,833 + -1.1
2,885,949 - +0.2
2,885,993 - +0.4
2,886,000 + +0.3
2,886,256 + -3.9
2,886,328 - SGL_RS15315 0.11 -1.2
2,886,361 + SGL_RS15315 0.13 -3.5
2,886,369 + SGL_RS15315 0.14 -3.7
2,886,538 + SGL_RS15315 0.27 -3.3
2,886,747 + SGL_RS15315 0.42 -2.1
2,886,827 + SGL_RS15315 0.48 -4.2
2,886,874 - SGL_RS15315 0.52 -4.0
2,886,880 - SGL_RS15315 0.52 -3.6
2,887,072 - SGL_RS15315 0.67 -3.7
2,887,218 - SGL_RS15315 0.78 -3.1
2,887,312 + SGL_RS15315 0.85 -3.2
2,887,320 - SGL_RS15315 0.85 -2.4
2,887,419 + -3.8
2,887,506 - -2.7
2,887,791 - -4.6
2,887,982 - SGL_RS15320 0.23 -6.0
2,888,002 + SGL_RS15320 0.24 -3.9
2,888,010 - SGL_RS15320 0.25 -2.2
2,888,035 + SGL_RS15320 0.26 -3.6
2,888,035 + SGL_RS15320 0.26 -3.3
2,888,136 - SGL_RS15320 0.33 -2.3
2,888,266 + SGL_RS15320 0.42 -2.7
2,888,276 + SGL_RS15320 0.43 -3.2

Or see this region's nucleotide sequence