Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14890

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14885 and SGL_RS14890 are separated by 37 nucleotidesSGL_RS14890 and SGL_RS14895 are separated by 541 nucleotidesSGL_RS14895 and SGL_RS14900 overlap by 4 nucleotides SGL_RS14885: SGL_RS14885 - malate dehydrogenase, at 2,795,426 to 2,796,400 _RS14885 SGL_RS14890: SGL_RS14890 - NAD(P)H-quinone oxidoreductase subunit O, at 2,796,438 to 2,796,656 _RS14890 SGL_RS14895: SGL_RS14895 - DUF2811 domain-containing protein, at 2,797,198 to 2,797,425 _RS14895 SGL_RS14900: SGL_RS14900 - aminoacyl-tRNA hydrolase, at 2,797,422 to 2,798,006 _RS14900 Position (kb) 2796 2797Strain fitness (log2 ratio) -1 0 1 2at 2795.468 kb on - strandat 2795.668 kb on - strand, within SGL_RS14885at 2795.831 kb on + strand, within SGL_RS14885at 2795.854 kb on + strand, within SGL_RS14885at 2795.862 kb on - strand, within SGL_RS14885at 2795.862 kb on - strand, within SGL_RS14885at 2795.864 kb on + strand, within SGL_RS14885at 2795.892 kb on - strand, within SGL_RS14885at 2795.914 kb on + strand, within SGL_RS14885at 2796.052 kb on - strand, within SGL_RS14885at 2796.063 kb on + strand, within SGL_RS14885at 2796.181 kb on - strand, within SGL_RS14885at 2796.313 kb on + strandat 2796.349 kb on + strandat 2796.414 kb on - strandat 2796.466 kb on - strand, within SGL_RS14890at 2796.478 kb on - strand, within SGL_RS14890at 2796.631 kb on - strand, within SGL_RS14890at 2796.864 kb on - strandat 2797.160 kb on + strandat 2797.281 kb on - strand, within SGL_RS14895at 2797.309 kb on + strand, within SGL_RS14895at 2797.323 kb on - strand, within SGL_RS14895at 2797.492 kb on - strand, within SGL_RS14900at 2797.550 kb on - strand, within SGL_RS14900

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,795,468 - -1.2
2,795,668 - SGL_RS14885 0.25 +0.2
2,795,831 + SGL_RS14885 0.42 -0.8
2,795,854 + SGL_RS14885 0.44 +0.4
2,795,862 - SGL_RS14885 0.45 -1.0
2,795,862 - SGL_RS14885 0.45 +0.0
2,795,864 + SGL_RS14885 0.45 +0.3
2,795,892 - SGL_RS14885 0.48 -0.9
2,795,914 + SGL_RS14885 0.50 +0.0
2,796,052 - SGL_RS14885 0.64 -1.0
2,796,063 + SGL_RS14885 0.65 -0.6
2,796,181 - SGL_RS14885 0.77 -0.4
2,796,313 + +0.6
2,796,349 + +0.2
2,796,414 - -0.2
2,796,466 - SGL_RS14890 0.13 +1.5
2,796,478 - SGL_RS14890 0.18 +1.9
2,796,631 - SGL_RS14890 0.88 +1.3
2,796,864 - +1.0
2,797,160 + +0.9
2,797,281 - SGL_RS14895 0.36 +0.8
2,797,309 + SGL_RS14895 0.49 +1.1
2,797,323 - SGL_RS14895 0.55 +0.9
2,797,492 - SGL_RS14900 0.12 -0.1
2,797,550 - SGL_RS14900 0.22 -1.4

Or see this region's nucleotide sequence