Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14750

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14740 and SGL_RS14745 are separated by 54 nucleotidesSGL_RS14745 and SGL_RS14750 are separated by 56 nucleotidesSGL_RS14750 and SGL_RS14755 are separated by 84 nucleotides SGL_RS14740: SGL_RS14740 - Uma2 family endonuclease, at 2,759,808 to 2,760,380 _RS14740 SGL_RS14745: SGL_RS14745 - hypothetical protein, at 2,760,435 to 2,760,632 _RS14745 SGL_RS14750: SGL_RS14750 - TldD/PmbA family protein, at 2,760,689 to 2,762,029 _RS14750 SGL_RS14755: SGL_RS14755 - tetratricopeptide repeat protein, at 2,762,114 to 2,762,953 _RS14755 Position (kb) 2760 2761 2762 2763Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2760.002 kb on + strand, within SGL_RS14740at 2760.007 kb on + strand, within SGL_RS14740at 2760.547 kb on + strand, within SGL_RS14745at 2760.675 kb on - strandat 2760.704 kb on + strandat 2760.729 kb on + strandat 2760.850 kb on - strand, within SGL_RS14750at 2760.860 kb on + strand, within SGL_RS14750at 2760.866 kb on + strand, within SGL_RS14750at 2761.025 kb on + strand, within SGL_RS14750at 2761.164 kb on + strand, within SGL_RS14750at 2761.178 kb on + strand, within SGL_RS14750at 2761.183 kb on + strand, within SGL_RS14750at 2761.205 kb on - strand, within SGL_RS14750at 2761.210 kb on - strand, within SGL_RS14750at 2761.558 kb on - strand, within SGL_RS14750at 2761.612 kb on + strand, within SGL_RS14750at 2761.644 kb on - strand, within SGL_RS14750at 2761.699 kb on - strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.867 kb on + strand, within SGL_RS14750at 2761.877 kb on + strand, within SGL_RS14750at 2761.916 kb on + strandat 2761.986 kb on - strandat 2762.022 kb on - strandat 2762.050 kb on + strandat 2762.087 kb on - strandat 2762.087 kb on - strandat 2762.235 kb on - strand, within SGL_RS14755at 2762.267 kb on + strand, within SGL_RS14755at 2762.284 kb on - strand, within SGL_RS14755at 2762.341 kb on - strand, within SGL_RS14755at 2762.341 kb on - strand, within SGL_RS14755at 2762.343 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.382 kb on + strand, within SGL_RS14755at 2762.387 kb on + strand, within SGL_RS14755at 2762.475 kb on + strand, within SGL_RS14755at 2762.550 kb on + strand, within SGL_RS14755at 2762.728 kb on - strand, within SGL_RS14755at 2762.813 kb on + strand, within SGL_RS14755at 2762.843 kb on - strand, within SGL_RS14755at 2762.856 kb on - strand, within SGL_RS14755at 2762.985 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,760,002 + SGL_RS14740 0.34 -0.0
2,760,007 + SGL_RS14740 0.35 +0.3
2,760,547 + SGL_RS14745 0.57 +0.3
2,760,675 - -1.0
2,760,704 + -0.3
2,760,729 + -2.4
2,760,850 - SGL_RS14750 0.12 -3.7
2,760,860 + SGL_RS14750 0.13 -3.4
2,760,866 + SGL_RS14750 0.13 -3.8
2,761,025 + SGL_RS14750 0.25 -0.7
2,761,164 + SGL_RS14750 0.35 -0.4
2,761,178 + SGL_RS14750 0.36 -6.1
2,761,183 + SGL_RS14750 0.37 -3.8
2,761,205 - SGL_RS14750 0.38 -3.7
2,761,210 - SGL_RS14750 0.39 -3.0
2,761,558 - SGL_RS14750 0.65 -5.9
2,761,612 + SGL_RS14750 0.69 -4.1
2,761,644 - SGL_RS14750 0.71 -3.1
2,761,699 - SGL_RS14750 0.75 -4.5
2,761,867 + SGL_RS14750 0.88 -5.6
2,761,867 + SGL_RS14750 0.88 -3.2
2,761,867 + SGL_RS14750 0.88 -3.0
2,761,877 + SGL_RS14750 0.89 -3.3
2,761,916 + -3.5
2,761,986 - -3.1
2,762,022 - -4.2
2,762,050 + +0.6
2,762,087 - +1.0
2,762,087 - -0.3
2,762,235 - SGL_RS14755 0.14 +0.6
2,762,267 + SGL_RS14755 0.18 -0.7
2,762,284 - SGL_RS14755 0.20 -2.7
2,762,341 - SGL_RS14755 0.27 +1.1
2,762,341 - SGL_RS14755 0.27 +0.2
2,762,343 + SGL_RS14755 0.27 +0.1
2,762,382 + SGL_RS14755 0.32 +0.7
2,762,382 + SGL_RS14755 0.32 +0.4
2,762,382 + SGL_RS14755 0.32 -0.6
2,762,382 + SGL_RS14755 0.32 -0.2
2,762,387 + SGL_RS14755 0.33 -0.6
2,762,475 + SGL_RS14755 0.43 +0.2
2,762,550 + SGL_RS14755 0.52 -0.2
2,762,728 - SGL_RS14755 0.73 +0.4
2,762,813 + SGL_RS14755 0.83 +0.5
2,762,843 - SGL_RS14755 0.87 +0.1
2,762,856 - SGL_RS14755 0.88 +0.2
2,762,985 - +0.4

Or see this region's nucleotide sequence