Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14485

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14480 and SGL_RS14485 are separated by 195 nucleotidesSGL_RS14485 and SGL_RS14490 are separated by 147 nucleotides SGL_RS14480: SGL_RS14480 - uroporphyrinogen-III C-methyltransferase, at 2,700,944 to 2,701,735 _RS14480 SGL_RS14485: SGL_RS14485 - transcription-repair coupling factor, at 2,701,931 to 2,705,530 _RS14485 SGL_RS14490: SGL_RS14490 - hypothetical protein, at 2,705,678 to 2,705,983 _RS14490 Position (kb) 2701 2702 2703 2704 2705 2706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2700.956 kb on + strandat 2701.126 kb on - strand, within SGL_RS14480at 2701.729 kb on + strandat 2701.829 kb on + strandat 2702.032 kb on - strandat 2702.034 kb on + strandat 2702.979 kb on - strand, within SGL_RS14485at 2703.011 kb on + strand, within SGL_RS14485at 2703.115 kb on + strand, within SGL_RS14485at 2703.222 kb on + strand, within SGL_RS14485at 2703.462 kb on + strand, within SGL_RS14485at 2703.508 kb on + strand, within SGL_RS14485at 2703.518 kb on - strand, within SGL_RS14485at 2703.566 kb on + strand, within SGL_RS14485at 2704.021 kb on - strand, within SGL_RS14485at 2704.253 kb on + strand, within SGL_RS14485at 2704.538 kb on - strand, within SGL_RS14485at 2704.605 kb on - strand, within SGL_RS14485at 2704.608 kb on - strand, within SGL_RS14485at 2704.819 kb on - strand, within SGL_RS14485at 2704.887 kb on + strand, within SGL_RS14485at 2704.889 kb on + strand, within SGL_RS14485at 2704.909 kb on + strand, within SGL_RS14485at 2704.956 kb on - strand, within SGL_RS14485at 2705.067 kb on + strand, within SGL_RS14485at 2705.067 kb on + strand, within SGL_RS14485at 2705.075 kb on - strand, within SGL_RS14485at 2705.085 kb on - strand, within SGL_RS14485at 2705.145 kb on + strand, within SGL_RS14485at 2705.169 kb on - strand, within SGL_RS14485at 2705.225 kb on - strandat 2705.301 kb on - strandat 2705.385 kb on - strandat 2705.423 kb on + strandat 2705.423 kb on + strandat 2705.431 kb on - strandat 2705.436 kb on - strandat 2705.514 kb on + strandat 2705.514 kb on + strandat 2705.514 kb on + strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.522 kb on - strandat 2705.780 kb on + strand, within SGL_RS14490at 2705.788 kb on - strand, within SGL_RS14490at 2705.897 kb on - strand, within SGL_RS14490at 2705.977 kb on + strandat 2706.088 kb on + strandat 2706.189 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,700,956 + +0.1
2,701,126 - SGL_RS14480 0.23 -0.7
2,701,729 + -3.0
2,701,829 + -0.8
2,702,032 - +2.3
2,702,034 + +2.4
2,702,979 - SGL_RS14485 0.29 +3.2
2,703,011 + SGL_RS14485 0.30 +2.9
2,703,115 + SGL_RS14485 0.33 +3.4
2,703,222 + SGL_RS14485 0.36 +3.3
2,703,462 + SGL_RS14485 0.43 +2.7
2,703,508 + SGL_RS14485 0.44 +2.7
2,703,518 - SGL_RS14485 0.44 +3.5
2,703,566 + SGL_RS14485 0.45 +2.0
2,704,021 - SGL_RS14485 0.58 +3.1
2,704,253 + SGL_RS14485 0.65 +3.0
2,704,538 - SGL_RS14485 0.72 +2.5
2,704,605 - SGL_RS14485 0.74 +3.1
2,704,608 - SGL_RS14485 0.74 +3.4
2,704,819 - SGL_RS14485 0.80 +3.2
2,704,887 + SGL_RS14485 0.82 +2.6
2,704,889 + SGL_RS14485 0.82 +3.3
2,704,909 + SGL_RS14485 0.83 +2.8
2,704,956 - SGL_RS14485 0.84 +3.5
2,705,067 + SGL_RS14485 0.87 +3.3
2,705,067 + SGL_RS14485 0.87 +3.2
2,705,075 - SGL_RS14485 0.87 +3.4
2,705,085 - SGL_RS14485 0.88 +2.7
2,705,145 + SGL_RS14485 0.89 +3.6
2,705,169 - SGL_RS14485 0.90 +3.5
2,705,225 - +3.1
2,705,301 - +3.2
2,705,385 - +2.9
2,705,423 + +1.0
2,705,423 + +0.6
2,705,431 - +1.6
2,705,436 - +1.1
2,705,514 + -0.3
2,705,514 + +0.7
2,705,514 + -0.7
2,705,522 - +0.6
2,705,522 - +0.7
2,705,522 - -0.6
2,705,522 - +0.4
2,705,522 - -0.7
2,705,780 + SGL_RS14490 0.33 +0.2
2,705,788 - SGL_RS14490 0.36 +1.3
2,705,897 - SGL_RS14490 0.72 +0.7
2,705,977 + +0.4
2,706,088 + +1.3
2,706,189 - +0.7

Or see this region's nucleotide sequence