Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14380 and SGL_RS14385 are separated by 4 nucleotides SGL_RS14385 and SGL_RS14390 are separated by 216 nucleotides SGL_RS14390 and SGL_RS14395 are separated by 116 nucleotides SGL_RS14395 and SGL_RS14400 are separated by 197 nucleotides
SGL_RS14380: SGL_RS14380 - DUF1361 domain-containing protein, at 2,681,894 to 2,682,547
_RS14380
SGL_RS14385: SGL_RS14385 - response regulator transcription factor, at 2,682,552 to 2,683,226
_RS14385
SGL_RS14390: SGL_RS14390 - histidine phosphatase family protein, at 2,683,443 to 2,684,081
_RS14390
SGL_RS14395: SGL_RS14395 - hypothetical protein, at 2,684,198 to 2,684,824
_RS14395
SGL_RS14400: SGL_RS14400 - cation:proton antiporter, at 2,685,022 to 2,687,055
_RS14400
Position (kb)
2683
2684
2685 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2682.509 kb on - strand at 2682.584 kb on - strand at 2682.594 kb on - strand at 2682.645 kb on - strand, within SGL_RS14385 at 2682.690 kb on - strand, within SGL_RS14385 at 2682.690 kb on - strand, within SGL_RS14385 at 2682.711 kb on + strand, within SGL_RS14385 at 2682.907 kb on + strand, within SGL_RS14385 at 2682.924 kb on - strand, within SGL_RS14385 at 2683.045 kb on - strand, within SGL_RS14385 at 2683.063 kb on + strand, within SGL_RS14385 at 2683.071 kb on - strand, within SGL_RS14385 at 2683.134 kb on - strand, within SGL_RS14385 at 2683.134 kb on - strand, within SGL_RS14385 at 2683.136 kb on + strand, within SGL_RS14385 at 2683.136 kb on + strand, within SGL_RS14385 at 2683.646 kb on + strand, within SGL_RS14390 at 2683.653 kb on - strand, within SGL_RS14390 at 2683.751 kb on + strand, within SGL_RS14390 at 2683.908 kb on + strand, within SGL_RS14390 at 2683.916 kb on - strand, within SGL_RS14390 at 2683.933 kb on + strand, within SGL_RS14390 at 2684.171 kb on + strand at 2684.364 kb on - strand, within SGL_RS14395 at 2684.457 kb on - strand, within SGL_RS14395 at 2684.592 kb on - strand, within SGL_RS14395 at 2684.592 kb on - strand, within SGL_RS14395 at 2684.730 kb on + strand, within SGL_RS14395 at 2684.754 kb on + strand, within SGL_RS14395 at 2684.779 kb on - strand at 2684.783 kb on + strand at 2684.783 kb on + strand at 2684.791 kb on - strand at 2684.791 kb on - strand at 2684.791 kb on - strand at 2684.791 kb on - strand at 2684.796 kb on - strand at 2684.813 kb on - strand at 2684.835 kb on + strand at 2684.852 kb on + strand at 2685.026 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 2,682,509 - +0.3 2,682,584 - -1.2 2,682,594 - -1.7 2,682,645 - SGL_RS14385 0.14 -1.2 2,682,690 - SGL_RS14385 0.20 -2.8 2,682,690 - SGL_RS14385 0.20 -1.5 2,682,711 + SGL_RS14385 0.24 -1.7 2,682,907 + SGL_RS14385 0.53 -4.8 2,682,924 - SGL_RS14385 0.55 -1.9 2,683,045 - SGL_RS14385 0.73 -1.7 2,683,063 + SGL_RS14385 0.76 -3.4 2,683,071 - SGL_RS14385 0.77 -0.7 2,683,134 - SGL_RS14385 0.86 -2.4 2,683,134 - SGL_RS14385 0.86 +0.0 2,683,136 + SGL_RS14385 0.87 -3.3 2,683,136 + SGL_RS14385 0.87 -2.5 2,683,646 + SGL_RS14390 0.32 +2.5 2,683,653 - SGL_RS14390 0.33 +2.0 2,683,751 + SGL_RS14390 0.48 +2.4 2,683,908 + SGL_RS14390 0.73 +2.6 2,683,916 - SGL_RS14390 0.74 +2.5 2,683,933 + SGL_RS14390 0.77 +1.7 2,684,171 + +0.0 2,684,364 - SGL_RS14395 0.26 +0.5 2,684,457 - SGL_RS14395 0.41 +0.6 2,684,592 - SGL_RS14395 0.63 -0.9 2,684,592 - SGL_RS14395 0.63 +0.2 2,684,730 + SGL_RS14395 0.85 +0.7 2,684,754 + SGL_RS14395 0.89 +0.5 2,684,779 - -0.1 2,684,783 + +1.1 2,684,783 + +1.9 2,684,791 - +0.1 2,684,791 - +0.6 2,684,791 - +0.6 2,684,791 - +0.2 2,684,796 - +0.8 2,684,813 - +0.7 2,684,835 + -0.4 2,684,852 + +0.4 2,685,026 + +0.7
Or see this region's nucleotide sequence