Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14150

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14140 and SGL_RS14145 are separated by 135 nucleotidesSGL_RS14145 and SGL_RS14150 are separated by 2 nucleotidesSGL_RS14150 and SGL_RS14155 are separated by 255 nucleotides SGL_RS14140: SGL_RS14140 - low-complexity tail membrane protein, at 2,630,469 to 2,631,071 _RS14140 SGL_RS14145: SGL_RS14145 - type II toxin-antitoxin system VapC family toxin, at 2,631,207 to 2,631,608 _RS14145 SGL_RS14150: SGL_RS14150 - antitoxin, at 2,631,611 to 2,631,868 _RS14150 SGL_RS14155: SGL_RS14155 - cation:proton antiporter, at 2,632,124 to 2,633,509 _RS14155 Position (kb) 2631 2632Strain fitness (log2 ratio) -1 0 1at 2630.668 kb on - strand, within SGL_RS14140at 2630.773 kb on + strand, within SGL_RS14140at 2630.779 kb on - strand, within SGL_RS14140at 2630.882 kb on + strand, within SGL_RS14140at 2630.987 kb on - strand, within SGL_RS14140at 2631.022 kb on - strandat 2631.712 kb on + strand, within SGL_RS14150at 2632.038 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,630,668 - SGL_RS14140 0.33 +0.3
2,630,773 + SGL_RS14140 0.50 -0.7
2,630,779 - SGL_RS14140 0.51 +1.1
2,630,882 + SGL_RS14140 0.68 +1.2
2,630,987 - SGL_RS14140 0.86 +0.2
2,631,022 - +0.2
2,631,712 + SGL_RS14150 0.39 +1.0
2,632,038 + +0.1

Or see this region's nucleotide sequence