Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14090

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14080 and SGL_RS14085 are separated by 76 nucleotidesSGL_RS14085 and SGL_RS14090 are separated by 135 nucleotidesSGL_RS14090 and SGL_RS19040 are separated by 126 nucleotidesSGL_RS19040 and SGL_RS14100 overlap by 14 nucleotides SGL_RS14080: SGL_RS14080 - DICT sensory domain-containing protein, at 2,618,067 to 2,620,094 _RS14080 SGL_RS14085: SGL_RS14085 - PAS domain-containing protein, at 2,620,171 to 2,620,662 _RS14085 SGL_RS14090: SGL_RS14090 - murein biosynthesis integral membrane protein MurJ, at 2,620,798 to 2,622,399 _RS14090 SGL_RS19040: SGL_RS19040 - hypothetical protein, at 2,622,526 to 2,622,981 _RS19040 SGL_RS14100: SGL_RS14100 - gamma-glutamylcyclotransferase, at 2,622,968 to 2,623,402 _RS14100 Position (kb) 2620 2621 2622 2623Strain fitness (log2 ratio) -2 -1 0 1at 2619.805 kb on - strand, within SGL_RS14080at 2619.874 kb on + strand, within SGL_RS14080at 2620.166 kb on + strandat 2620.240 kb on + strand, within SGL_RS14085at 2620.385 kb on - strand, within SGL_RS14085at 2620.387 kb on + strand, within SGL_RS14085at 2620.494 kb on - strand, within SGL_RS14085at 2620.509 kb on + strand, within SGL_RS14085at 2620.522 kb on - strand, within SGL_RS14085at 2620.580 kb on + strand, within SGL_RS14085at 2620.612 kb on + strand, within SGL_RS14085at 2620.658 kb on + strandat 2620.689 kb on - strandat 2620.736 kb on + strandat 2620.744 kb on - strandat 2620.744 kb on - strandat 2620.744 kb on - strandat 2620.744 kb on - strandat 2622.392 kb on + strandat 2622.544 kb on + strandat 2622.628 kb on - strand, within SGL_RS19040at 2622.631 kb on - strand, within SGL_RS19040at 2622.748 kb on + strand, within SGL_RS19040at 2622.840 kb on - strand, within SGL_RS19040at 2622.966 kb on - strandat 2623.080 kb on + strand, within SGL_RS14100at 2623.085 kb on + strand, within SGL_RS14100at 2623.236 kb on - strand, within SGL_RS14100at 2623.247 kb on + strand, within SGL_RS14100at 2623.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,619,805 - SGL_RS14080 0.86 +0.8
2,619,874 + SGL_RS14080 0.89 +0.6
2,620,166 + -0.9
2,620,240 + SGL_RS14085 0.14 -1.7
2,620,385 - SGL_RS14085 0.43 -1.0
2,620,387 + SGL_RS14085 0.44 -2.0
2,620,494 - SGL_RS14085 0.66 -1.6
2,620,509 + SGL_RS14085 0.69 +0.4
2,620,522 - SGL_RS14085 0.71 -2.2
2,620,580 + SGL_RS14085 0.83 -1.6
2,620,612 + SGL_RS14085 0.90 -0.4
2,620,658 + -0.1
2,620,689 - -0.4
2,620,736 + -0.5
2,620,744 - -1.0
2,620,744 - -0.3
2,620,744 - +0.3
2,620,744 - +0.4
2,622,392 + -0.4
2,622,544 + +0.4
2,622,628 - SGL_RS19040 0.22 +0.7
2,622,631 - SGL_RS19040 0.23 -0.0
2,622,748 + SGL_RS19040 0.49 +0.8
2,622,840 - SGL_RS19040 0.69 +0.3
2,622,966 - +0.7
2,623,080 + SGL_RS14100 0.26 -1.2
2,623,085 + SGL_RS14100 0.27 -1.4
2,623,236 - SGL_RS14100 0.62 +0.4
2,623,247 + SGL_RS14100 0.64 -0.2
2,623,370 - -0.0

Or see this region's nucleotide sequence