Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13725

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13720 and SGL_RS13725 are separated by 103 nucleotidesSGL_RS13725 and SGL_RS13730 are separated by 46 nucleotidesSGL_RS13730 and SGL_RS13735 are separated by 107 nucleotides SGL_RS13720: SGL_RS13720 - o-succinylbenzoate synthase, at 2,547,067 to 2,548,029 _RS13720 SGL_RS13725: SGL_RS13725 - peptidylprolyl isomerase, at 2,548,133 to 2,549,341 _RS13725 SGL_RS13730: SGL_RS13730 - elongation factor P, at 2,549,388 to 2,549,951 _RS13730 SGL_RS13735: SGL_RS13735 - acetyl-CoA carboxylase biotin carboxyl carrier protein, at 2,550,059 to 2,550,523 _RS13735 Position (kb) 2548 2549 2550Strain fitness (log2 ratio) -2 -1 0 1 2at 2547.147 kb on - strandat 2547.156 kb on + strandat 2547.163 kb on + strandat 2547.414 kb on - strand, within SGL_RS13720at 2547.769 kb on + strand, within SGL_RS13720at 2547.803 kb on + strand, within SGL_RS13720at 2547.974 kb on + strandat 2547.974 kb on + strandat 2548.048 kb on + strandat 2548.166 kb on + strandat 2548.271 kb on + strand, within SGL_RS13725at 2548.394 kb on - strand, within SGL_RS13725at 2548.435 kb on - strand, within SGL_RS13725at 2548.458 kb on - strand, within SGL_RS13725at 2548.504 kb on + strand, within SGL_RS13725at 2548.671 kb on + strand, within SGL_RS13725at 2549.004 kb on + strand, within SGL_RS13725at 2549.109 kb on + strand, within SGL_RS13725at 2549.117 kb on - strand, within SGL_RS13725at 2549.117 kb on - strand, within SGL_RS13725at 2549.189 kb on - strand, within SGL_RS13725at 2549.356 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
remove
2,547,147 - -0.0
2,547,156 + -0.6
2,547,163 + +1.0
2,547,414 - SGL_RS13720 0.36 -1.3
2,547,769 + SGL_RS13720 0.73 -2.0
2,547,803 + SGL_RS13720 0.76 -1.3
2,547,974 + -1.8
2,547,974 + -1.6
2,548,048 + +0.8
2,548,166 + -1.0
2,548,271 + SGL_RS13725 0.11 +0.5
2,548,394 - SGL_RS13725 0.22 +1.0
2,548,435 - SGL_RS13725 0.25 +0.4
2,548,458 - SGL_RS13725 0.27 +0.7
2,548,504 + SGL_RS13725 0.31 +1.1
2,548,671 + SGL_RS13725 0.44 +1.4
2,549,004 + SGL_RS13725 0.72 +1.9
2,549,109 + SGL_RS13725 0.81 +1.1
2,549,117 - SGL_RS13725 0.81 +1.0
2,549,117 - SGL_RS13725 0.81 -0.2
2,549,189 - SGL_RS13725 0.87 +0.2
2,549,356 - +1.4

Or see this region's nucleotide sequence