Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13640

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13635 and SGL_RS13640 are separated by 392 nucleotidesSGL_RS13640 and SGL_RS13645 are separated by 160 nucleotidesSGL_RS13645 and SGL_RS19020 are separated by 40 nucleotides SGL_RS13635: SGL_RS13635 - twin-arginine translocase subunit TatC, at 2,531,666 to 2,532,430 _RS13635 SGL_RS13640: SGL_RS13640 - NAD(P)-dependent oxidoreductase, at 2,532,823 to 2,533,695 _RS13640 SGL_RS13645: SGL_RS13645 - hypothetical protein, at 2,533,856 to 2,534,065 _RS13645 SGL_RS19020: SGL_RS19020 - IS630-like element ISTcSa family transposase, at 2,534,106 to 2,534,954 _RS19020 Position (kb) 2532 2533 2534Strain fitness (log2 ratio) -1 0 1at 2531.909 kb on - strand, within SGL_RS13635at 2532.543 kb on + strandat 2532.933 kb on + strand, within SGL_RS13640at 2533.341 kb on - strand, within SGL_RS13640at 2533.560 kb on - strand, within SGL_RS13640at 2533.606 kb on - strand, within SGL_RS13640at 2533.606 kb on - strand, within SGL_RS13640at 2533.719 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,531,909 - SGL_RS13635 0.32 -0.6
2,532,543 + +0.1
2,532,933 + SGL_RS13640 0.13 +0.2
2,533,341 - SGL_RS13640 0.59 +0.4
2,533,560 - SGL_RS13640 0.84 +0.9
2,533,606 - SGL_RS13640 0.90 +0.3
2,533,606 - SGL_RS13640 0.90 +0.5
2,533,719 - +0.2

Or see this region's nucleotide sequence