Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13325

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13315 and SGL_RS13320 are separated by 38 nucleotidesSGL_RS13320 and SGL_RS13325 are separated by 43 nucleotidesSGL_RS13325 and SGL_RS13330 are separated by 166 nucleotides SGL_RS13315: SGL_RS13315 - hypothetical protein, at 2,454,087 to 2,455,082 _RS13315 SGL_RS13320: SGL_RS13320 - DUF2808 domain-containing protein, at 2,455,121 to 2,455,711 _RS13320 SGL_RS13325: SGL_RS13325 - ABC transporter permease, at 2,455,755 to 2,456,768 _RS13325 SGL_RS13330: SGL_RS13330 - histidine--tRNA ligase, at 2,456,935 to 2,458,278 _RS13330 Position (kb) 2455 2456 2457Strain fitness (log2 ratio) -1 0 1 2 3 4at 2455.166 kb on + strandat 2455.181 kb on - strand, within SGL_RS13320at 2455.181 kb on - strand, within SGL_RS13320at 2455.203 kb on - strand, within SGL_RS13320at 2455.206 kb on + strand, within SGL_RS13320at 2455.407 kb on + strand, within SGL_RS13320at 2455.441 kb on - strand, within SGL_RS13320at 2455.484 kb on + strand, within SGL_RS13320at 2455.492 kb on - strand, within SGL_RS13320at 2455.741 kb on - strandat 2455.855 kb on - strandat 2456.005 kb on + strand, within SGL_RS13325at 2456.013 kb on - strand, within SGL_RS13325at 2456.050 kb on + strand, within SGL_RS13325at 2456.058 kb on - strand, within SGL_RS13325at 2456.137 kb on + strand, within SGL_RS13325at 2456.216 kb on + strand, within SGL_RS13325at 2456.424 kb on + strand, within SGL_RS13325at 2456.435 kb on + strand, within SGL_RS13325at 2456.486 kb on - strand, within SGL_RS13325at 2456.511 kb on + strand, within SGL_RS13325at 2456.667 kb on + strandat 2456.675 kb on - strandat 2456.675 kb on - strandat 2456.777 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,455,166 + +0.7
2,455,181 - SGL_RS13320 0.10 +0.5
2,455,181 - SGL_RS13320 0.10 +0.4
2,455,203 - SGL_RS13320 0.14 +0.1
2,455,206 + SGL_RS13320 0.14 +0.4
2,455,407 + SGL_RS13320 0.48 +0.4
2,455,441 - SGL_RS13320 0.54 +0.3
2,455,484 + SGL_RS13320 0.61 +0.2
2,455,492 - SGL_RS13320 0.63 +0.0
2,455,741 - +0.3
2,455,855 - +2.7
2,456,005 + SGL_RS13325 0.25 +1.9
2,456,013 - SGL_RS13325 0.25 +2.6
2,456,050 + SGL_RS13325 0.29 +3.2
2,456,058 - SGL_RS13325 0.30 +1.9
2,456,137 + SGL_RS13325 0.38 +1.9
2,456,216 + SGL_RS13325 0.45 +1.6
2,456,424 + SGL_RS13325 0.66 +1.2
2,456,435 + SGL_RS13325 0.67 +1.3
2,456,486 - SGL_RS13325 0.72 +2.3
2,456,511 + SGL_RS13325 0.75 +1.5
2,456,667 + +2.2
2,456,675 - +3.8
2,456,675 - +1.8
2,456,777 + +1.1

Or see this region's nucleotide sequence