Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13210

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13200 and SGL_RS13205 are separated by 130 nucleotidesSGL_RS13205 and SGL_RS13210 are separated by 251 nucleotidesSGL_RS13210 and SGL_RS13215 are separated by 127 nucleotidesSGL_RS13215 and SGL_RS19625 are separated by 36 nucleotidesSGL_RS19625 and SGL_RS13220 are separated by 6 nucleotides SGL_RS13200: SGL_RS13200 - cytochrome b6, at 2,428,010 to 2,428,678 _RS13200 SGL_RS13205: SGL_RS13205 - cytochrome b6-f complex subunit IV, at 2,428,809 to 2,429,291 _RS13205 SGL_RS13210: SGL_RS13210 - glycosyltransferase, at 2,429,543 to 2,430,964 _RS13210 SGL_RS13215: SGL_RS13215 - SxtJ family membrane protein, at 2,431,092 to 2,431,499 _RS13215 SGL_RS19625: SGL_RS19625 - DUF5989 family protein, at 2,431,536 to 2,431,697 _RS19625 SGL_RS13220: SGL_RS13220 - ribonuclease III, at 2,431,704 to 2,432,438 _RS13220 Position (kb) 2429 2430 2431Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2428.745 kb on + strandat 2429.275 kb on - strandat 2429.337 kb on - strandat 2429.620 kb on - strandat 2429.702 kb on - strand, within SGL_RS13210at 2431.189 kb on - strand, within SGL_RS13215at 2431.285 kb on - strand, within SGL_RS13215at 2431.803 kb on + strand, within SGL_RS13220at 2431.816 kb on - strand, within SGL_RS13220at 2431.875 kb on + strand, within SGL_RS13220at 2431.909 kb on - strand, within SGL_RS13220at 2431.924 kb on - strand, within SGL_RS13220

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,428,745 + -2.9
2,429,275 - +2.5
2,429,337 - +0.3
2,429,620 - +0.9
2,429,702 - SGL_RS13210 0.11 +1.0
2,431,189 - SGL_RS13215 0.24 -0.1
2,431,285 - SGL_RS13215 0.47 +1.3
2,431,803 + SGL_RS13220 0.13 +1.0
2,431,816 - SGL_RS13220 0.15 +0.6
2,431,875 + SGL_RS13220 0.23 +1.3
2,431,909 - SGL_RS13220 0.28 -0.1
2,431,924 - SGL_RS13220 0.30 -0.1

Or see this region's nucleotide sequence