Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12695

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12685 and SGL_RS12690 overlap by 2 nucleotidesSGL_RS12690 and SGL_RS12695 are separated by 227 nucleotidesSGL_RS12695 and SGL_RS12700 are separated by 59 nucleotidesSGL_RS12700 and SGL_RS12705 overlap by 4 nucleotides SGL_RS12685: SGL_RS12685 - hypothetical protein, at 2,302,457 to 2,302,639 _RS12685 SGL_RS12690: SGL_RS12690 - hypothetical protein, at 2,302,638 to 2,303,279 _RS12690 SGL_RS12695: SGL_RS12695 - tetratricopeptide repeat protein, at 2,303,507 to 2,304,034 _RS12695 SGL_RS12700: SGL_RS12700 - CBS domain-containing protein, at 2,304,094 to 2,304,561 _RS12700 SGL_RS12705: SGL_RS12705 - recombinase family protein, at 2,304,558 to 2,305,886 _RS12705 Position (kb) 2303 2304 2305Strain fitness (log2 ratio) -1 0 1at 2302.518 kb on + strand, within SGL_RS12685at 2302.627 kb on - strandat 2302.642 kb on + strandat 2302.678 kb on - strandat 2302.703 kb on - strand, within SGL_RS12690at 2303.029 kb on + strand, within SGL_RS12690at 2303.037 kb on - strand, within SGL_RS12690at 2303.353 kb on + strandat 2303.526 kb on + strandat 2303.881 kb on - strand, within SGL_RS12695at 2303.944 kb on - strand, within SGL_RS12695at 2304.270 kb on + strand, within SGL_RS12700at 2304.857 kb on - strand, within SGL_RS12705at 2304.935 kb on - strand, within SGL_RS12705at 2305.000 kb on - strand, within SGL_RS12705

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,302,518 + SGL_RS12685 0.33 +0.1
2,302,627 - +0.5
2,302,642 + -1.1
2,302,678 - -0.6
2,302,703 - SGL_RS12690 0.10 -0.3
2,303,029 + SGL_RS12690 0.61 -0.3
2,303,037 - SGL_RS12690 0.62 -0.5
2,303,353 + -0.5
2,303,526 + +0.7
2,303,881 - SGL_RS12695 0.71 +1.0
2,303,944 - SGL_RS12695 0.83 +0.8
2,304,270 + SGL_RS12700 0.38 -1.4
2,304,857 - SGL_RS12705 0.22 +0.4
2,304,935 - SGL_RS12705 0.28 +0.3
2,305,000 - SGL_RS12705 0.33 +0.4

Or see this region's nucleotide sequence