Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12430

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12420 and SGL_RS12425 are separated by 112 nucleotidesSGL_RS12425 and SGL_RS12430 are separated by 127 nucleotidesSGL_RS12430 and SGL_RS12435 are separated by 38 nucleotidesSGL_RS12435 and SGL_RS12440 are separated by 52 nucleotides SGL_RS12420: SGL_RS12420 - hypothetical protein, at 2,242,886 to 2,243,137 _RS12420 SGL_RS12425: SGL_RS12425 - TspO/MBR family protein, at 2,243,250 to 2,243,723 _RS12425 SGL_RS12430: SGL_RS12430 - circadian clock protein KaiC, at 2,243,851 to 2,245,368 _RS12430 SGL_RS12435: SGL_RS12435 - PCP reductase family protein, at 2,245,407 to 2,245,583 _RS12435 SGL_RS12440: SGL_RS12440 - glycosyltransferase, at 2,245,636 to 2,246,631 _RS12440 Position (kb) 2243 2244 2245 2246Strain fitness (log2 ratio) -1 0 1 2at 2243.122 kb on + strandat 2243.187 kb on - strandat 2243.405 kb on + strand, within SGL_RS12425at 2243.420 kb on + strand, within SGL_RS12425at 2243.420 kb on + strand, within SGL_RS12425at 2243.428 kb on - strand, within SGL_RS12425at 2243.428 kb on - strand, within SGL_RS12425at 2243.451 kb on + strand, within SGL_RS12425at 2243.459 kb on - strand, within SGL_RS12425at 2243.459 kb on - strand, within SGL_RS12425at 2243.459 kb on - strand, within SGL_RS12425at 2243.459 kb on - strand, within SGL_RS12425at 2243.493 kb on + strand, within SGL_RS12425at 2243.505 kb on + strand, within SGL_RS12425at 2243.553 kb on + strand, within SGL_RS12425at 2243.664 kb on - strand, within SGL_RS12425at 2243.828 kb on + strandat 2243.934 kb on - strandat 2244.052 kb on - strand, within SGL_RS12430at 2244.065 kb on - strand, within SGL_RS12430at 2244.123 kb on - strand, within SGL_RS12430at 2244.310 kb on + strand, within SGL_RS12430at 2244.744 kb on + strand, within SGL_RS12430at 2244.865 kb on + strand, within SGL_RS12430at 2245.326 kb on - strandat 2245.533 kb on - strand, within SGL_RS12435at 2245.647 kb on - strandat 2245.761 kb on + strand, within SGL_RS12440at 2245.761 kb on + strand, within SGL_RS12440at 2245.779 kb on - strand, within SGL_RS12440at 2245.779 kb on - strand, within SGL_RS12440at 2246.031 kb on - strand, within SGL_RS12440at 2246.240 kb on + strand, within SGL_RS12440at 2246.301 kb on + strand, within SGL_RS12440at 2246.332 kb on + strand, within SGL_RS12440

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,243,122 + +0.1
2,243,187 - -0.0
2,243,405 + SGL_RS12425 0.33 -0.3
2,243,420 + SGL_RS12425 0.36 -0.4
2,243,420 + SGL_RS12425 0.36 +0.2
2,243,428 - SGL_RS12425 0.38 -0.7
2,243,428 - SGL_RS12425 0.38 +0.3
2,243,451 + SGL_RS12425 0.42 -1.1
2,243,459 - SGL_RS12425 0.44 +0.1
2,243,459 - SGL_RS12425 0.44 -0.3
2,243,459 - SGL_RS12425 0.44 -0.3
2,243,459 - SGL_RS12425 0.44 +1.2
2,243,493 + SGL_RS12425 0.51 -0.0
2,243,505 + SGL_RS12425 0.54 -0.4
2,243,553 + SGL_RS12425 0.64 -0.2
2,243,664 - SGL_RS12425 0.87 -0.3
2,243,828 + +0.1
2,243,934 - +1.3
2,244,052 - SGL_RS12430 0.13 +1.1
2,244,065 - SGL_RS12430 0.14 +0.3
2,244,123 - SGL_RS12430 0.18 +0.8
2,244,310 + SGL_RS12430 0.30 +0.8
2,244,744 + SGL_RS12430 0.59 +0.6
2,244,865 + SGL_RS12430 0.67 +1.8
2,245,326 - +0.7
2,245,533 - SGL_RS12435 0.71 +0.8
2,245,647 - -1.5
2,245,761 + SGL_RS12440 0.13 -1.3
2,245,761 + SGL_RS12440 0.13 -1.6
2,245,779 - SGL_RS12440 0.14 -1.0
2,245,779 - SGL_RS12440 0.14 -1.7
2,246,031 - SGL_RS12440 0.40 -0.9
2,246,240 + SGL_RS12440 0.61 -1.7
2,246,301 + SGL_RS12440 0.67 -1.1
2,246,332 + SGL_RS12440 0.70 -1.4

Or see this region's nucleotide sequence