Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12420 and SGL_RS12425 are separated by 112 nucleotides SGL_RS12425 and SGL_RS12430 are separated by 127 nucleotides SGL_RS12430 and SGL_RS12435 are separated by 38 nucleotides SGL_RS12435 and SGL_RS12440 are separated by 52 nucleotides
SGL_RS12420: SGL_RS12420 - hypothetical protein, at 2,242,886 to 2,243,137
_RS12420
SGL_RS12425: SGL_RS12425 - TspO/MBR family protein, at 2,243,250 to 2,243,723
_RS12425
SGL_RS12430: SGL_RS12430 - circadian clock protein KaiC, at 2,243,851 to 2,245,368
_RS12430
SGL_RS12435: SGL_RS12435 - PCP reductase family protein, at 2,245,407 to 2,245,583
_RS12435
SGL_RS12440: SGL_RS12440 - glycosyltransferase, at 2,245,636 to 2,246,631
_RS12440
Position (kb)
2243
2244
2245
2246 Strain fitness (log2 ratio)
-1
0
1
2 at 2243.122 kb on + strand at 2243.187 kb on - strand at 2243.405 kb on + strand, within SGL_RS12425 at 2243.420 kb on + strand, within SGL_RS12425 at 2243.420 kb on + strand, within SGL_RS12425 at 2243.428 kb on - strand, within SGL_RS12425 at 2243.428 kb on - strand, within SGL_RS12425 at 2243.451 kb on + strand, within SGL_RS12425 at 2243.459 kb on - strand, within SGL_RS12425 at 2243.459 kb on - strand, within SGL_RS12425 at 2243.459 kb on - strand, within SGL_RS12425 at 2243.459 kb on - strand, within SGL_RS12425 at 2243.493 kb on + strand, within SGL_RS12425 at 2243.505 kb on + strand, within SGL_RS12425 at 2243.553 kb on + strand, within SGL_RS12425 at 2243.664 kb on - strand, within SGL_RS12425 at 2243.828 kb on + strand at 2243.934 kb on - strand at 2244.052 kb on - strand, within SGL_RS12430 at 2244.065 kb on - strand, within SGL_RS12430 at 2244.123 kb on - strand, within SGL_RS12430 at 2244.310 kb on + strand, within SGL_RS12430 at 2244.744 kb on + strand, within SGL_RS12430 at 2244.865 kb on + strand, within SGL_RS12430 at 2245.326 kb on - strand at 2245.533 kb on - strand, within SGL_RS12435 at 2245.647 kb on - strand at 2245.761 kb on + strand, within SGL_RS12440 at 2245.761 kb on + strand, within SGL_RS12440 at 2245.779 kb on - strand, within SGL_RS12440 at 2245.779 kb on - strand, within SGL_RS12440 at 2246.031 kb on - strand, within SGL_RS12440 at 2246.240 kb on + strand, within SGL_RS12440 at 2246.301 kb on + strand, within SGL_RS12440 at 2246.332 kb on + strand, within SGL_RS12440
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 2,243,122 + +0.1 2,243,187 - -0.0 2,243,405 + SGL_RS12425 0.33 -0.3 2,243,420 + SGL_RS12425 0.36 -0.4 2,243,420 + SGL_RS12425 0.36 +0.2 2,243,428 - SGL_RS12425 0.38 -0.7 2,243,428 - SGL_RS12425 0.38 +0.3 2,243,451 + SGL_RS12425 0.42 -1.1 2,243,459 - SGL_RS12425 0.44 +0.1 2,243,459 - SGL_RS12425 0.44 -0.3 2,243,459 - SGL_RS12425 0.44 -0.3 2,243,459 - SGL_RS12425 0.44 +1.2 2,243,493 + SGL_RS12425 0.51 -0.0 2,243,505 + SGL_RS12425 0.54 -0.4 2,243,553 + SGL_RS12425 0.64 -0.2 2,243,664 - SGL_RS12425 0.87 -0.3 2,243,828 + +0.1 2,243,934 - +1.3 2,244,052 - SGL_RS12430 0.13 +1.1 2,244,065 - SGL_RS12430 0.14 +0.3 2,244,123 - SGL_RS12430 0.18 +0.8 2,244,310 + SGL_RS12430 0.30 +0.8 2,244,744 + SGL_RS12430 0.59 +0.6 2,244,865 + SGL_RS12430 0.67 +1.8 2,245,326 - +0.7 2,245,533 - SGL_RS12435 0.71 +0.8 2,245,647 - -1.5 2,245,761 + SGL_RS12440 0.13 -1.3 2,245,761 + SGL_RS12440 0.13 -1.6 2,245,779 - SGL_RS12440 0.14 -1.0 2,245,779 - SGL_RS12440 0.14 -1.7 2,246,031 - SGL_RS12440 0.40 -0.9 2,246,240 + SGL_RS12440 0.61 -1.7 2,246,301 + SGL_RS12440 0.67 -1.1 2,246,332 + SGL_RS12440 0.70 -1.4
Or see this region's nucleotide sequence