Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12350

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS12345 and SGL_RS12350 are separated by 123 nucleotidesSGL_RS12350 and SGL_RS12355 are separated by 0 nucleotidesSGL_RS12355 and SGL_RS12360 overlap by 26 nucleotides SGL_RS12345: SGL_RS12345 - pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha, at 2,230,487 to 2,231,515 _RS12345 SGL_RS12350: SGL_RS12350 - MFS transporter, at 2,231,639 to 2,233,036 _RS12350 SGL_RS12355: SGL_RS12355 - exodeoxyribonuclease III, at 2,233,037 to 2,233,834 _RS12355 SGL_RS12360: SGL_RS12360 - DUF3750 domain-containing protein, at 2,233,809 to 2,234,273 _RS12360 Position (kb) 2231 2232 2233 2234Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 2231.545 kb on + strandat 2231.648 kb on + strandat 2231.715 kb on - strandat 2232.389 kb on + strand, within SGL_RS12350at 2232.396 kb on + strand, within SGL_RS12350at 2232.508 kb on - strand, within SGL_RS12350at 2232.543 kb on + strand, within SGL_RS12350at 2232.693 kb on + strand, within SGL_RS12350at 2232.722 kb on - strand, within SGL_RS12350at 2232.920 kb on + strandat 2233.372 kb on + strand, within SGL_RS12355at 2233.417 kb on - strand, within SGL_RS12355at 2233.475 kb on + strand, within SGL_RS12355at 2233.475 kb on + strand, within SGL_RS12355at 2233.529 kb on - strand, within SGL_RS12355at 2233.564 kb on - strand, within SGL_RS12355at 2233.646 kb on + strand, within SGL_RS12355at 2233.868 kb on + strand, within SGL_RS12360at 2233.869 kb on - strand, within SGL_RS12360at 2233.969 kb on + strand, within SGL_RS12360

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,231,545 + -2.5
2,231,648 + -5.1
2,231,715 - -6.2
2,232,389 + SGL_RS12350 0.54 -5.0
2,232,396 + SGL_RS12350 0.54 -4.8
2,232,508 - SGL_RS12350 0.62 -4.7
2,232,543 + SGL_RS12350 0.65 -3.7
2,232,693 + SGL_RS12350 0.75 -4.7
2,232,722 - SGL_RS12350 0.77 -5.1
2,232,920 + -4.8
2,233,372 + SGL_RS12355 0.42 +0.4
2,233,417 - SGL_RS12355 0.48 -0.2
2,233,475 + SGL_RS12355 0.55 +0.5
2,233,475 + SGL_RS12355 0.55 +0.7
2,233,529 - SGL_RS12355 0.62 -0.6
2,233,564 - SGL_RS12355 0.66 +0.3
2,233,646 + SGL_RS12355 0.76 -1.3
2,233,868 + SGL_RS12360 0.13 +0.4
2,233,869 - SGL_RS12360 0.13 -0.1
2,233,969 + SGL_RS12360 0.34 +0.3

Or see this region's nucleotide sequence