Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11815 and SGL_RS11820 overlap by 4 nucleotides SGL_RS11820 and SGL_RS11825 are separated by 207 nucleotides SGL_RS11825 and SGL_RS11830 are separated by 47 nucleotides SGL_RS11830 and SGL_RS11835 are separated by 30 nucleotides
SGL_RS11815: SGL_RS11815 - DNA repair protein RadA, at 2,100,463 to 2,101,980
_RS11815
SGL_RS11820: SGL_RS11820 - pentapeptide repeat-containing protein, at 2,101,977 to 2,102,561
_RS11820
SGL_RS11825: SGL_RS11825 - sodium:proton antiporter, at 2,102,769 to 2,104,391
_RS11825
SGL_RS11830: SGL_RS11830 - DUF2996 domain-containing protein, at 2,104,439 to 2,104,912
_RS11830
SGL_RS11835: SGL_RS11835 - transcription antitermination factor NusB, at 2,104,943 to 2,105,608
_RS11835
Position (kb)
2102
2103
2104
2105 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2101.900 kb on + strand at 2101.924 kb on + strand at 2101.937 kb on + strand at 2102.180 kb on - strand, within SGL_RS11820 at 2102.217 kb on + strand, within SGL_RS11820 at 2102.277 kb on + strand, within SGL_RS11820 at 2102.373 kb on + strand, within SGL_RS11820 at 2102.375 kb on - strand, within SGL_RS11820 at 2102.390 kb on + strand, within SGL_RS11820 at 2102.398 kb on - strand, within SGL_RS11820 at 2102.444 kb on + strand, within SGL_RS11820 at 2103.237 kb on - strand, within SGL_RS11825 at 2103.247 kb on - strand, within SGL_RS11825 at 2103.268 kb on + strand, within SGL_RS11825 at 2103.273 kb on + strand, within SGL_RS11825 at 2103.273 kb on + strand, within SGL_RS11825 at 2103.420 kb on + strand, within SGL_RS11825 at 2103.547 kb on - strand, within SGL_RS11825 at 2103.740 kb on + strand, within SGL_RS11825 at 2103.842 kb on - strand, within SGL_RS11825 at 2103.849 kb on - strand, within SGL_RS11825 at 2103.886 kb on - strand, within SGL_RS11825 at 2103.952 kb on - strand, within SGL_RS11825 at 2103.956 kb on + strand, within SGL_RS11825 at 2104.056 kb on - strand, within SGL_RS11825 at 2104.213 kb on - strand, within SGL_RS11825 at 2104.259 kb on - strand at 2104.396 kb on - strand at 2104.401 kb on - strand at 2104.403 kb on - strand at 2104.460 kb on - strand at 2104.490 kb on - strand, within SGL_RS11830 at 2104.540 kb on - strand, within SGL_RS11830 at 2105.030 kb on + strand, within SGL_RS11835 at 2105.171 kb on + strand, within SGL_RS11835 at 2105.334 kb on + strand, within SGL_RS11835 at 2105.340 kb on - strand, within SGL_RS11835 at 2105.342 kb on - strand, within SGL_RS11835 at 2105.364 kb on - strand, within SGL_RS11835 at 2105.364 kb on - strand, within SGL_RS11835
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 2,101,900 + +1.5 2,101,924 + -0.2 2,101,937 + -0.7 2,102,180 - SGL_RS11820 0.35 +1.1 2,102,217 + SGL_RS11820 0.41 -0.1 2,102,277 + SGL_RS11820 0.51 +0.9 2,102,373 + SGL_RS11820 0.68 +0.8 2,102,375 - SGL_RS11820 0.68 +0.4 2,102,390 + SGL_RS11820 0.71 -0.1 2,102,398 - SGL_RS11820 0.72 +0.7 2,102,444 + SGL_RS11820 0.80 -1.9 2,103,237 - SGL_RS11825 0.29 -1.0 2,103,247 - SGL_RS11825 0.29 -0.6 2,103,268 + SGL_RS11825 0.31 +0.5 2,103,273 + SGL_RS11825 0.31 -0.5 2,103,273 + SGL_RS11825 0.31 +0.5 2,103,420 + SGL_RS11825 0.40 +0.3 2,103,547 - SGL_RS11825 0.48 -1.7 2,103,740 + SGL_RS11825 0.60 -0.2 2,103,842 - SGL_RS11825 0.66 +0.1 2,103,849 - SGL_RS11825 0.67 +0.0 2,103,886 - SGL_RS11825 0.69 -0.1 2,103,952 - SGL_RS11825 0.73 -1.1 2,103,956 + SGL_RS11825 0.73 -1.0 2,104,056 - SGL_RS11825 0.79 +0.4 2,104,213 - SGL_RS11825 0.89 +0.5 2,104,259 - -0.9 2,104,396 - -0.8 2,104,401 - +0.8 2,104,403 - -0.2 2,104,460 - +0.3 2,104,490 - SGL_RS11830 0.11 +2.0 2,104,540 - SGL_RS11830 0.21 +2.1 2,105,030 + SGL_RS11835 0.13 -0.7 2,105,171 + SGL_RS11835 0.34 -1.1 2,105,334 + SGL_RS11835 0.59 +0.3 2,105,340 - SGL_RS11835 0.60 +0.9 2,105,342 - SGL_RS11835 0.60 -0.7 2,105,364 - SGL_RS11835 0.63 -0.7 2,105,364 - SGL_RS11835 0.63 -0.7
Or see this region's nucleotide sequence