Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11825

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11815 and SGL_RS11820 overlap by 4 nucleotidesSGL_RS11820 and SGL_RS11825 are separated by 207 nucleotidesSGL_RS11825 and SGL_RS11830 are separated by 47 nucleotidesSGL_RS11830 and SGL_RS11835 are separated by 30 nucleotides SGL_RS11815: SGL_RS11815 - DNA repair protein RadA, at 2,100,463 to 2,101,980 _RS11815 SGL_RS11820: SGL_RS11820 - pentapeptide repeat-containing protein, at 2,101,977 to 2,102,561 _RS11820 SGL_RS11825: SGL_RS11825 - sodium:proton antiporter, at 2,102,769 to 2,104,391 _RS11825 SGL_RS11830: SGL_RS11830 - DUF2996 domain-containing protein, at 2,104,439 to 2,104,912 _RS11830 SGL_RS11835: SGL_RS11835 - transcription antitermination factor NusB, at 2,104,943 to 2,105,608 _RS11835 Position (kb) 2102 2103 2104 2105Strain fitness (log2 ratio) -2 -1 0 1 2at 2101.900 kb on + strandat 2101.924 kb on + strandat 2101.937 kb on + strandat 2102.180 kb on - strand, within SGL_RS11820at 2102.217 kb on + strand, within SGL_RS11820at 2102.277 kb on + strand, within SGL_RS11820at 2102.373 kb on + strand, within SGL_RS11820at 2102.375 kb on - strand, within SGL_RS11820at 2102.390 kb on + strand, within SGL_RS11820at 2102.398 kb on - strand, within SGL_RS11820at 2102.444 kb on + strand, within SGL_RS11820at 2103.237 kb on - strand, within SGL_RS11825at 2103.247 kb on - strand, within SGL_RS11825at 2103.268 kb on + strand, within SGL_RS11825at 2103.273 kb on + strand, within SGL_RS11825at 2103.273 kb on + strand, within SGL_RS11825at 2103.420 kb on + strand, within SGL_RS11825at 2103.547 kb on - strand, within SGL_RS11825at 2103.740 kb on + strand, within SGL_RS11825at 2103.842 kb on - strand, within SGL_RS11825at 2103.849 kb on - strand, within SGL_RS11825at 2103.886 kb on - strand, within SGL_RS11825at 2103.952 kb on - strand, within SGL_RS11825at 2103.956 kb on + strand, within SGL_RS11825at 2104.056 kb on - strand, within SGL_RS11825at 2104.213 kb on - strand, within SGL_RS11825at 2104.259 kb on - strandat 2104.396 kb on - strandat 2104.401 kb on - strandat 2104.403 kb on - strandat 2104.460 kb on - strandat 2104.490 kb on - strand, within SGL_RS11830at 2104.540 kb on - strand, within SGL_RS11830at 2105.030 kb on + strand, within SGL_RS11835at 2105.171 kb on + strand, within SGL_RS11835at 2105.334 kb on + strand, within SGL_RS11835at 2105.340 kb on - strand, within SGL_RS11835at 2105.342 kb on - strand, within SGL_RS11835at 2105.364 kb on - strand, within SGL_RS11835at 2105.364 kb on - strand, within SGL_RS11835

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,101,900 + +1.5
2,101,924 + -0.2
2,101,937 + -0.7
2,102,180 - SGL_RS11820 0.35 +1.1
2,102,217 + SGL_RS11820 0.41 -0.1
2,102,277 + SGL_RS11820 0.51 +0.9
2,102,373 + SGL_RS11820 0.68 +0.8
2,102,375 - SGL_RS11820 0.68 +0.4
2,102,390 + SGL_RS11820 0.71 -0.1
2,102,398 - SGL_RS11820 0.72 +0.7
2,102,444 + SGL_RS11820 0.80 -1.9
2,103,237 - SGL_RS11825 0.29 -1.0
2,103,247 - SGL_RS11825 0.29 -0.6
2,103,268 + SGL_RS11825 0.31 +0.5
2,103,273 + SGL_RS11825 0.31 -0.5
2,103,273 + SGL_RS11825 0.31 +0.5
2,103,420 + SGL_RS11825 0.40 +0.3
2,103,547 - SGL_RS11825 0.48 -1.7
2,103,740 + SGL_RS11825 0.60 -0.2
2,103,842 - SGL_RS11825 0.66 +0.1
2,103,849 - SGL_RS11825 0.67 +0.0
2,103,886 - SGL_RS11825 0.69 -0.1
2,103,952 - SGL_RS11825 0.73 -1.1
2,103,956 + SGL_RS11825 0.73 -1.0
2,104,056 - SGL_RS11825 0.79 +0.4
2,104,213 - SGL_RS11825 0.89 +0.5
2,104,259 - -0.9
2,104,396 - -0.8
2,104,401 - +0.8
2,104,403 - -0.2
2,104,460 - +0.3
2,104,490 - SGL_RS11830 0.11 +2.0
2,104,540 - SGL_RS11830 0.21 +2.1
2,105,030 + SGL_RS11835 0.13 -0.7
2,105,171 + SGL_RS11835 0.34 -1.1
2,105,334 + SGL_RS11835 0.59 +0.3
2,105,340 - SGL_RS11835 0.60 +0.9
2,105,342 - SGL_RS11835 0.60 -0.7
2,105,364 - SGL_RS11835 0.63 -0.7
2,105,364 - SGL_RS11835 0.63 -0.7

Or see this region's nucleotide sequence