Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11805 and SGL_RS11810 are separated by 318 nucleotides SGL_RS11810 and SGL_RS11815 are separated by 201 nucleotides
SGL_RS11805: SGL_RS11805 - DNA polymerase III subunit delta', at 2,097,643 to 2,098,602
_RS11805
SGL_RS11810: SGL_RS11810 - urea ABC transporter substrate-binding protein, at 2,098,921 to 2,100,261
_RS11810
SGL_RS11815: SGL_RS11815 - DNA repair protein RadA, at 2,100,463 to 2,101,980
_RS11815
Position (kb)
2098
2099
2100
2101 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2098.659 kb on + strand at 2098.699 kb on - strand at 2098.805 kb on - strand at 2098.925 kb on - strand at 2098.989 kb on + strand at 2099.010 kb on + strand at 2099.049 kb on + strand at 2099.202 kb on - strand, within SGL_RS11810 at 2099.284 kb on + strand, within SGL_RS11810 at 2099.368 kb on - strand, within SGL_RS11810 at 2099.383 kb on - strand, within SGL_RS11810 at 2099.400 kb on - strand, within SGL_RS11810 at 2099.468 kb on - strand, within SGL_RS11810 at 2099.528 kb on + strand, within SGL_RS11810 at 2099.537 kb on - strand, within SGL_RS11810 at 2099.604 kb on - strand, within SGL_RS11810 at 2099.612 kb on + strand, within SGL_RS11810 at 2099.649 kb on + strand, within SGL_RS11810 at 2099.652 kb on - strand, within SGL_RS11810 at 2099.690 kb on + strand, within SGL_RS11810 at 2099.850 kb on - strand, within SGL_RS11810 at 2099.850 kb on - strand, within SGL_RS11810 at 2100.254 kb on - strand at 2100.383 kb on - strand at 2100.435 kb on + strand at 2100.450 kb on - strand at 2100.467 kb on - strand at 2100.530 kb on - strand at 2100.608 kb on + strand at 2100.616 kb on - strand, within SGL_RS11815 at 2100.662 kb on - strand, within SGL_RS11815 at 2100.754 kb on - strand, within SGL_RS11815 at 2100.908 kb on + strand, within SGL_RS11815 at 2100.908 kb on + strand, within SGL_RS11815 at 2100.960 kb on - strand, within SGL_RS11815
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation remove 2,098,659 + +0.8 2,098,699 - +0.5 2,098,805 - +2.4 2,098,925 - +2.3 2,098,989 + +1.5 2,099,010 + +2.3 2,099,049 + +1.7 2,099,202 - SGL_RS11810 0.21 +2.4 2,099,284 + SGL_RS11810 0.27 +1.7 2,099,368 - SGL_RS11810 0.33 +1.9 2,099,383 - SGL_RS11810 0.34 +2.3 2,099,400 - SGL_RS11810 0.36 +3.2 2,099,468 - SGL_RS11810 0.41 +2.0 2,099,528 + SGL_RS11810 0.45 +2.6 2,099,537 - SGL_RS11810 0.46 +2.0 2,099,604 - SGL_RS11810 0.51 +1.5 2,099,612 + SGL_RS11810 0.52 +2.4 2,099,649 + SGL_RS11810 0.54 +2.6 2,099,652 - SGL_RS11810 0.55 +2.7 2,099,690 + SGL_RS11810 0.57 +2.0 2,099,850 - SGL_RS11810 0.69 +2.2 2,099,850 - SGL_RS11810 0.69 +2.7 2,100,254 - +3.4 2,100,383 - +1.6 2,100,435 + +0.1 2,100,450 - +0.4 2,100,467 - +0.5 2,100,530 - -0.1 2,100,608 + -0.6 2,100,616 - SGL_RS11815 0.10 +0.8 2,100,662 - SGL_RS11815 0.13 -0.9 2,100,754 - SGL_RS11815 0.19 +0.4 2,100,908 + SGL_RS11815 0.29 +0.6 2,100,908 + SGL_RS11815 0.29 -0.4 2,100,960 - SGL_RS11815 0.33 -0.1
Or see this region's nucleotide sequence