Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11580

Experiment: growth in full media bubbled with ambient air but diluted to prevent light attenuation

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11565 and SGL_RS11570 are separated by 230 nucleotidesSGL_RS11570 and SGL_RS11575 are separated by 53 nucleotidesSGL_RS11575 and SGL_RS11580 are separated by 239 nucleotidesSGL_RS11580 and SGL_RS11585 are separated by 128 nucleotidesSGL_RS11585 and SGL_RS11590 are separated by 66 nucleotides SGL_RS11565: SGL_RS11565 - IS4-like element IS4Sa family transposase, at 2,048,497 to 2,049,513 _RS11565 SGL_RS11570: SGL_RS11570 - DUF309 domain-containing protein, at 2,049,744 to 2,050,130 _RS11570 SGL_RS11575: SGL_RS11575 - tRNA-His, at 2,050,184 to 2,050,256 _RS11575 SGL_RS11580: SGL_RS11580 - DUF760 domain-containing protein, at 2,050,496 to 2,050,819 _RS11580 SGL_RS11585: SGL_RS11585 - SsrA-binding protein SmpB, at 2,050,948 to 2,051,412 _RS11585 SGL_RS11590: SGL_RS11590 - hypothetical protein, at 2,051,479 to 2,053,305 _RS11590 Position (kb) 2050 2051Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2049.715 kb on - strandat 2049.765 kb on + strandat 2049.768 kb on - strandat 2049.772 kb on + strandat 2049.808 kb on + strand, within SGL_RS11570at 2049.815 kb on - strand, within SGL_RS11570at 2049.891 kb on + strand, within SGL_RS11570at 2049.903 kb on - strand, within SGL_RS11570at 2049.904 kb on - strand, within SGL_RS11570at 2049.993 kb on + strand, within SGL_RS11570at 2050.053 kb on - strand, within SGL_RS11570at 2050.104 kb on - strandat 2050.384 kb on - strandat 2050.475 kb on + strandat 2050.543 kb on - strand, within SGL_RS11580at 2050.555 kb on + strand, within SGL_RS11580at 2050.756 kb on - strand, within SGL_RS11580at 2050.837 kb on - strandat 2050.837 kb on - strandat 2051.059 kb on - strand, within SGL_RS11585at 2051.452 kb on - strandat 2051.670 kb on + strand, within SGL_RS11590at 2051.810 kb on + strand, within SGL_RS11590

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media bubbled with ambient air but diluted to prevent light attenuation
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2,049,715 - +0.2
2,049,765 + +0.7
2,049,768 - +1.0
2,049,772 + -0.3
2,049,808 + SGL_RS11570 0.17 +0.8
2,049,815 - SGL_RS11570 0.18 +1.0
2,049,891 + SGL_RS11570 0.38 +1.3
2,049,903 - SGL_RS11570 0.41 +1.4
2,049,904 - SGL_RS11570 0.41 +0.9
2,049,993 + SGL_RS11570 0.64 -1.0
2,050,053 - SGL_RS11570 0.80 +0.0
2,050,104 - +0.4
2,050,384 - +0.0
2,050,475 + +3.0
2,050,543 - SGL_RS11580 0.15 +3.1
2,050,555 + SGL_RS11580 0.18 +3.2
2,050,756 - SGL_RS11580 0.80 +2.8
2,050,837 - +1.8
2,050,837 - +3.4
2,051,059 - SGL_RS11585 0.24 +2.9
2,051,452 - -0.0
2,051,670 + SGL_RS11590 0.10 +0.0
2,051,810 + SGL_RS11590 0.18 -1.9

Or see this region's nucleotide sequence